PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cla004880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 283aa MW: 30451.1 Da PI: 8.3984 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.3 | 4.7e-40 | 55 | 115 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al+cprC+stntkfCyynnyslsqPryfCkaCrryWt+GG+lrnvPvGgg+rknk+ss Cla004880 55 KEQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKACRRYWTEGGSLRNVPVGGGSRKNKRSS 115 7899******************************************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-27 | 47 | 107 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.0E-34 | 57 | 113 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.301 | 59 | 113 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 61 | 97 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 283 aa Download sequence Send to blast |
MGIDYCGFDD QFAGGGVVVK QMEGGGSSSS SKPNNNNNNN NNNGNLLERK ARPQKEQALN 60 CPRCNSTNTK FCYYNNYSLS QPRYFCKACR RYWTEGGSLR NVPVGGGSRK NKRSSLSSSA 120 DKKINASDQN PKIIHHAHQD LNLAIFPPNN NNNNNTPPIP SSTSTSSSSH LLGSFMTAAP 180 AAGVFNGGGG FGLSELKPSS LSFSLEGFEN GGGYGDLHHN HHHHHHHHHH HQDQTAVMFP 240 MEELKQSNGR GEFEENRGGG GHGAGDNNSG GGFWNGMLGG GSW |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 2e-75 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 2e-75 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022973007.1 | 1e-115 | dof zinc finger protein DOF2.5-like | ||||
Swissprot | Q8LAP8 | 3e-47 | DOF46_ARATH; Dof zinc finger protein DOF4.6 | ||||
TrEMBL | A0A1S3AV39 | 2e-82 | A0A1S3AV39_CUCME; dof zinc finger protein DOF4.6-like | ||||
STRING | XP_004174098.1 | 1e-83 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF674 | 34 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24060.1 | 1e-36 | Dof family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|