PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004880
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Dof
Protein Properties Length: 283aa    MW: 30451.1 Da    PI: 8.3984
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004880genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.34.7e-4055115262
     zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                ke+al+cprC+stntkfCyynnyslsqPryfCkaCrryWt+GG+lrnvPvGgg+rknk+ss
  Cla004880  55 KEQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKACRRYWTEGGSLRNVPVGGGSRKNKRSS 115
                7899******************************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-2747107IPR003851Zinc finger, Dof-type
PfamPF027015.0E-3457113IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.30159113IPR003851Zinc finger, Dof-type
PROSITE patternPS0136106197IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGIDYCGFDD QFAGGGVVVK QMEGGGSSSS SKPNNNNNNN NNNGNLLERK ARPQKEQALN  60
CPRCNSTNTK FCYYNNYSLS QPRYFCKACR RYWTEGGSLR NVPVGGGSRK NKRSSLSSSA  120
DKKINASDQN PKIIHHAHQD LNLAIFPPNN NNNNNTPPIP SSTSTSSSSH LLGSFMTAAP  180
AAGVFNGGGG FGLSELKPSS LSFSLEGFEN GGGYGDLHHN HHHHHHHHHH HQDQTAVMFP  240
MEELKQSNGR GEFEENRGGG GHGAGDNNSG GGFWNGMLGG GSW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818952e-75LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132632e-75LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022973007.11e-115dof zinc finger protein DOF2.5-like
SwissprotQ8LAP83e-47DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBLA0A1S3AV392e-82A0A1S3AV39_CUCME; dof zinc finger protein DOF4.6-like
STRINGXP_004174098.11e-83(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.11e-36Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]