PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla004862 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 196aa MW: 22464.4 Da PI: 7.9003 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 99.8 | 2e-31 | 45 | 97 | 5 | 58 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +YkeClkNhA+++Ggha+DGCgEfmps g +g+ +alkCaAC CHRnFHR++ + Cla004862 45 NYKECLKNHAVAVGGHALDGCGEFMPS-GPHGSLDALKCAACHCHRNFHRKDIT 97 7*************************9.999********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 7.2E-28 | 45 | 95 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.0E-29 | 45 | 95 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-19 | 46 | 95 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.787 | 46 | 95 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 8.03E-18 | 123 | 189 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-28 | 124 | 190 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.9E-25 | 129 | 186 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MEVEEHEEED MEIVEPASNY INKIHPLSRH TKNPSPVHSN PILYNYKECL KNHAVAVGGH 60 ALDGCGEFMP SGPHGSLDAL KCAACHCHRN FHRKDITDDG GVNGESGSQY ISYWRAPRML 120 ALPSPSSARK RVRTKFTEEQ KEKMVEMAEK MEWRIQKTDE AAVMEFCNEI GVKRRVLKVW 180 MHNNKNTFRS KESKQN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-22 | 130 | 187 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022999794.1 | 2e-87 | zinc-finger homeodomain protein 1-like | ||||
Swissprot | Q9SB61 | 3e-51 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A1U8M3J7 | 4e-58 | A0A1U8M3J7_GOSHI; zinc-finger homeodomain protein 2-like | ||||
STRING | Gorai.003G042700.1 | 6e-58 | (Gossypium raimondii) | ||||
STRING | Gorai.008G092000.1 | 3e-58 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 6e-45 | homeobox protein 22 |
Publications ? help Back to Top | |||
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