PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004791
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family RAV
Protein Properties Length: 360aa    MW: 41508.5 Da    PI: 7.8893
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004791genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.52.6e-115299255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
               ++kGV    ++grW A+I+       + +r++lg+f t+++Aa a++ a+ kl+ 
  Cla004791 52 KFKGVV-PQQNGRWGAQIYA------NhQRIWLGTFKTEKDAAMAYDSAAIKLRT 99
               789996.6679******999......44**********99************996 PP
2B394.76.2e-30176266184
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                f+k+ltpsdv+k++rlv+pkk+a +h        +++  +++++++d+s ++W+++++y+++s+++v+t+GW++Fvk+++Lk++D+++F+ 
  Cla004791 176 FQKELTPSDVGKLNRLVIPKKYAVKHfpyisesAEENGDDIEIVFYDTSMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYT 266
                99****************************98855556899************************************************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.89952107IPR001471AP2/ERF domain
SMARTSM003804.4E-2152113IPR001471AP2/ERF domain
PfamPF008475.4E-65299IPR001471AP2/ERF domain
CDDcd000188.18E-2452109No hitNo description
SuperFamilySSF541715.56E-1652108IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.4E-1852107IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.0E-35171300IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-29174269IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-27174281No hitNo description
PfamPF023625.5E-27176267IPR003340B3 DNA binding domain
SMARTSM010191.7E-22176285IPR003340B3 DNA binding domain
PROSITE profilePS5086313.084176289IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEDEASSSFL SHIKTPILTD EVSDSNFTYY AIPEAKRPRL DNDLNDVVAV GKFKGVVPQQ  60
NGRWGAQIYA NHQRIWLGTF KTEKDAAMAY DSAAIKLRTR DSHRNFPWTR RTIEEPNFQI  120
KFSTDAVLSM IKDGSYYSKF SAYLRTRSQI HDSNLQNPQN FDNTDGDSLF SCSHLFQKEL  180
TPSDVGKLNR LVIPKKYAVK HFPYISESAE ENGDDIEIVF YDTSMKTWKF RYCYWRSSQS  240
FVFTRGWNRF VKEKKLKAND IITFYTYESC GRDENGGTLN FIDVIYKKSE DDQSDSSCLA  300
AEKESVKNEQ ILESELGQNQ GKGCEKEKNK KKKEILSIEL NPNDKNVGGK RIRLFGVHID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-3017527413108DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451118.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P53e-98RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A1S3BQV00.0A0A1S3BQV0_CUCME; AP2/ERF and B3 domain-containing transcription factor At1g50680-like
STRINGXP_008451118.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-100RAV family protein