PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004787
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 277aa    MW: 29463.3 Da    PI: 9.0443
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004787genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.4e-067499227
               -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
               kt+lC+ f     C++Gd+C +aHg+
  Cla004787 74 KTRLCNKFNSAEGCRFGDKCYYAHGE 99
               8***********************96 PP
2zf-CCCH27.74.6e-09244269127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +kt+lC +f + GtC + +rC+FaHg+
  Cla004787 244 FKTKLCANFTK-GTCTFRERCHFAHGE 269
                69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.211937IPR000571Zinc finger, CCCH-type
SMARTSM003561.6936IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-61036IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-71134IPR000571Zinc finger, CCCH-type
PfamPF146080.51734No hitNo description
Gene3DG3DSA:4.10.1000.101.0E-1269103IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-770103IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.9972100IPR000571Zinc finger, CCCH-type
SMARTSM003560.0627299IPR000571Zinc finger, CCCH-type
PfamPF146080.0437898No hitNo description
SuperFamilySSF547913.36E-14134215IPR004088K Homology domain, type 1
SMARTSM003224.9E-11143213IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.104.6E-14143214IPR004088K Homology domain, type 1
PROSITE profilePS5008413.355144208IPR004088K Homology domain, type 1
PfamPF000133.0E-9146210IPR004088K Homology domain, type 1
CDDcd001057.37E-12146208No hitNo description
Gene3DG3DSA:4.10.1000.104.1E-15242275IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-8243274IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5243269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009243270IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-5244269IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDSLSTGLGS KSRPCTKFFS TSGCPFGEGC HFAHYVPGGF KAISQMISPA LPPGIRNPAP  60
PQSFPDGVSP PAVKTRLCNK FNSAEGCRFG DKCYYAHGEW ELGRPNPPQD HGGMGPMQQP  120
RMGGGWNAPP PPPNHGPAAS FGASATAKIS VDASLAGPII GKNGVNSKNI CRMTGARLSI  180
KEHESDPNLK NIELEGTFDQ INLASSMVRE LIANVGAASA NNAMKQHHHH HSGMQQSSGS  240
ANNFKTKLCA NFTKGTCTFR ERCHFAHGES ELRKPAI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023516879.10.0zinc finger CCCH domain-containing protein 14-like isoform X1
RefseqXP_023516880.10.0zinc finger CCCH domain-containing protein 14-like isoform X2
SwissprotQ7F8R02e-98C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A0A0M2L91e-173A0A0A0M2L9_CUCSA; Uncharacterized protein
STRINGXP_004149023.11e-174(Cucumis sativus)
STRINGXP_004161573.11e-174(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-69C3H family protein