PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004676
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Dof
Protein Properties Length: 358aa    MW: 39073.9 Da    PI: 8.4266
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004676genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1214.1e-3871131262
     zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                +e+ lkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGa+rnvPvGgg+r++ k+s
  Cla004676  71 PEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRS 131
                67889***************************************************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-3059119IPR003851Zinc finger, Dof-type
PfamPF027011.6E-3174129IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.01275129IPR003851Zinc finger, Dof-type
PROSITE patternPS01361077113IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MVFSSVPVFL DPPNWPSQQP TQLQGSGCET NNAQHLPPPA PPTSGGGGSG PGSIRPGSMT  60
DRARLAKIPQ PEAGLKCPRC ESTNTKFCYF NNYSLTQPRH FCKTCRRYWT RGGAMRNVPV  120
GGGCRRSSKR SSKGGSNRSK SPGGSSTSTS TVSSNSCTTD IISQQLGHHP PPPTTHLPFF  180
SQNLHHLSDF GNLGLNFEAL QIPSLPSSAG GVESSILSSG ITDHHQWKIP FFANLHQQNG  240
MYSNFMADQD HHHHQQGADF SNYQRLSKPL LESGFNTTTT TNHHQLENIN NNNNNSMKIL  300
EETQGINNLS RNFLGIQPND DQFWNSSTTT TTTPGNIAWS SDQISDHFNS TSSTTHLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130RRSSKRS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818900.0LN681890.1 Cucumis melo genomic scaffold, anchoredscaffold00048.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008458891.11e-169PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBLA0A1S3CA581e-167A0A1S3CA58_CUCME; dof zinc finger protein DOF2.4-like
STRINGXP_008458891.11e-168(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.13e-37DNA binding with one finger 2.4