PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla004676 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | Dof | ||||||||
Protein Properties | Length: 358aa MW: 39073.9 Da PI: 8.4266 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121 | 4.1e-38 | 71 | 131 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+ lkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGa+rnvPvGgg+r++ k+s Cla004676 71 PEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRS 131 67889***************************************************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-30 | 59 | 119 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.6E-31 | 74 | 129 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.012 | 75 | 129 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 77 | 113 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MVFSSVPVFL DPPNWPSQQP TQLQGSGCET NNAQHLPPPA PPTSGGGGSG PGSIRPGSMT 60 DRARLAKIPQ PEAGLKCPRC ESTNTKFCYF NNYSLTQPRH FCKTCRRYWT RGGAMRNVPV 120 GGGCRRSSKR SSKGGSNRSK SPGGSSTSTS TVSSNSCTTD IISQQLGHHP PPPTTHLPFF 180 SQNLHHLSDF GNLGLNFEAL QIPSLPSSAG GVESSILSSG ITDHHQWKIP FFANLHQQNG 240 MYSNFMADQD HHHHQQGADF SNYQRLSKPL LESGFNTTTT TNHHQLENIN NNNNNSMKIL 300 EETQGINNLS RNFLGIQPND DQFWNSSTTT TTTPGNIAWS SDQISDHFNS TSSTTHLL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 130 | RRSSKRS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681890 | 0.0 | LN681890.1 Cucumis melo genomic scaffold, anchoredscaffold00048. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008458891.1 | 1e-169 | PREDICTED: dof zinc finger protein DOF2.4-like | ||||
TrEMBL | A0A1S3CA58 | 1e-167 | A0A1S3CA58_CUCME; dof zinc finger protein DOF2.4-like | ||||
STRING | XP_008458891.1 | 1e-168 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF656 | 34 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37590.1 | 3e-37 | DNA binding with one finger 2.4 |