PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004626
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NAC
Protein Properties Length: 379aa    MW: 42584.8 Da    PI: 5.043
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004626genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM965.9e-30361781128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksgyWk 84 
                lp+G++F+Ptdee++ e+L++k++  +      ++++   +++  +i++++P++Lp  v+++ ++++fF+k++++y+tg+rk+r+         ++ +W+
  Cla004626  36 LPAGVKFDPTDEEIM-EHLAAKCTVGNlkphalIDEFIPtLETDqGICYTHPENLP-GVSKDGNDVHFFHKTSNAYSTGQRKRRKiesehnssLEHFRWH 133
                799**********99.99***9998885555442222221222236**********.6677889********************85666555544677** PP

        NAM  85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                +tgk+k+v++ +g ++g kk++ +y  ++  +k++k++Wv+h+y+l
  Cla004626 134 KTGKTKAVIE-NGVHKGWKKIFSLYrsSKGGSKPQKSNWVIHQYHL 178
                **********.999***********4423456778*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-3527197IPR003441NAC domain
PROSITE profilePS5100530.57936197IPR003441NAC domain
PfamPF023656.9E-1337178IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MFLDNCMLLC LAVYLMRLFM CTSALILMVS PEWPGLPAGV KFDPTDEEIM EHLAAKCTVG  60
NLKPHALIDE FIPTLETDQG ICYTHPENLP GVSKDGNDVH FFHKTSNAYS TGQRKRRKIE  120
SEHNSSLEHF RWHKTGKTKA VIENGVHKGW KKIFSLYRSS KGGSKPQKSN WVIHQYHLGT  180
EEDEKEGEYV LSKISYQQPK QCIKSSDNML IVDFDAMLHQ TSPRTPKSNP PIPPRSGKSL  240
VSNAVADNSL PQSFAKEEES TPEASRVSYP NISSENDTGY HDWLAGESQD IDDVGLHYLE  300
DNLLCNEVLD SSAFISNNQV NQMPFPLSGT NAYHEIANDN VPCGIADLVN LELDTPPDFH  360
LADLQFGSQE SIFDWIDRI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818900.0LN681890.1 Cucumis melo genomic scaffold, anchoredscaffold00048.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008458820.10.0PREDICTED: NAC domain-containing protein 8 isoform X1
TrEMBLA0A1S3C8V30.0A0A1S3C8V3_CUCME; NAC domain-containing protein 8 isoform X1
STRINGXP_008458820.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75723047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.15e-76NAC family protein