PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla004555

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 416aa MW: 46568.9 Da PI: 7.0014

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla004555	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.2	3.5e-49	44	169	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + + + + +g Cla004555 44 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTDDFRSIG 142 79*************************.89***********8778899***********************************999 PP NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 lkktLvfy+g+apkg +t+W+m+eyrl Cla004555 143 LKKTLVFYSGKAPKGIRTSWIMNEYRL 169 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-55	38	189	IPR003441	NAC domain
PROSITE profile	PS51005	55.246	43	190	IPR003441	NAC domain
Pfam	PF02365	1.0E-24	45	169	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MAIAAATRSS SSTMSQEEIS NNKGNNCEDH HNINHDQHEH DVVMPGFRFH PTEEELVEFY 60 LRRKVEGKRF NVELITFLDL YRYDPWELPA LAAIGEKEWF FYVPRDRKYR NGDRPNRVTT 120 SGYWKATGAD RMIRTDDFRS IGLKKTLVFY SGKAPKGIRT SWIMNEYRLP HHETERYQKA 180 EISLCRVYKR AGVEDHPSLP RSLPTRASSS RITSSSTPKN NLLPGGSVNV VQTSSSSTDK 240 FPASFESQFH HHQLQIGVGV EATAADASAT SSCEEVTTVL GLSKQNPFPT TSLINLAATS 300 SLAVPASASA TPNCMEEDQQ QQQLSSSSSL ILPTYTSFFS PSSNSSLDDL QKLIHYQQQP 360 PLSASSPTVI NSLPSQYYQP TPPPPPQQLA LNTLPVVFSD RLWEWNPIQD AANPFK

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MAIAAATRSS SSTMSQEEIS NNKGNNCEDH HNINHDQHEH DVVMPGFRFH PTEEELVEFY  60
LRRKVEGKRF NVELITFLDL YRYDPWELPA LAAIGEKEWF FYVPRDRKYR NGDRPNRVTT  120
SGYWKATGAD RMIRTDDFRS IGLKKTLVFY SGKAPKGIRT SWIMNEYRLP HHETERYQKA  180
EISLCRVYKR AGVEDHPSLP RSLPTRASSS RITSSSTPKN NLLPGGSVNV VQTSSSSTDK  240
FPASFESQFH HHQLQIGVGV EATAADASAT SSCEEVTTVL GLSKQNPFPT TSLINLAATS  300
SLAVPASASA TPNCMEEDQQ QQQLSSSSSL ILPTYTSFFS PSSNSSLDDL QKLIHYQQQP  360
PLSASSPTVI NSLPSQYYQP TPPPPPQQLA LNTLPVVFSD RLWEWNPIQD AANPFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-54	45	190	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-54	45	190	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-54	45	190	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-54	45	190	19	165	NO APICAL MERISTEM PROTEIN
4dul_A	3e-54	45	190	19	165	NAC domain-containing protein 19
4dul_B	3e-54	45	190	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00257	DAP	Transfer from AT2G02450	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681858	1e-116	LN681858.1 Cucumis melo genomic scaffold, anchoredscaffold00028.
GenBank	LN713260	1e-116	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008452197.1	0.0	PREDICTED: NAC domain-containing protein 55
Swissprot	Q9ZVP8	1e-114	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A1S3BTB3	0.0	A0A1S3BTB3_CUCME; NAC domain-containing protein 55
STRING	XP_008452197.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7203	31	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	1e-110	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]