PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004538
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family AP2
Protein Properties Length: 512aa    MW: 56353.1 Da    PI: 6.6929
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004538genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.62.4e-11235291155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++gr++A+++d  +       rk  + g ++ +e+Aa+a++ a++k++g
  Cla004538 235 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEEKAARAYDLAALKYWG 291
                57*******************4444.2344336655.779999**************98 PP
2AP250.26.6e-16334385155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Cla004538 334 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 385
                57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-9235291IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-15235301IPR016177DNA-binding domain
CDDcd000187.38E-20235301No hitNo description
Gene3DG3DSA:3.30.730.108.4E-13236300IPR001471AP2/ERF domain
SMARTSM003806.2E-23236305IPR001471AP2/ERF domain
PROSITE profilePS5103217.649236299IPR001471AP2/ERF domain
PRINTSPR003672.2E-6237248IPR001471AP2/ERF domain
PfamPF008472.8E-10334385IPR001471AP2/ERF domain
CDDcd000181.21E-11334395No hitNo description
SuperFamilySSF541716.21E-18334395IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.1E-18335394IPR001471AP2/ERF domain
SMARTSM003803.5E-31335399IPR001471AP2/ERF domain
PROSITE profilePS5103219.177335393IPR001471AP2/ERF domain
PRINTSPR003672.2E-6375395IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MAPATNWLSF SLSPIEMLRS TDSPFLPYDS SSTPSPHYLL DNFYSHNGWS NNNTSHPKSS  60
QLFFMDGDEN NDAVKEDQTT TPTIFSTFLH PQTHHHHQPK LEDFLGDSSP MVRYSDSQTD  120
TQDSSLTHIY DHASAPPYFA DQQDLKTIAA FQAFSANSGS EVDDSASIAR THIPSAHSIE  180
SSLTNNELPS FSNCPTGALS LAVAHSSDTA TAGPIVAVDS ESSKKIADTF GQRTSIYRGV  240
TRHRWTGRYE AHLWDNSCRR EGQARKGRQG GYDKEEKAAR AYDLAALKYW GPTATTNFPV  300
SNYAKELEEM KHVTKQEFIA SLRRKSSGFS RGASIYRGVT RHHQQGRWQA RIGRVAGNKD  360
LYLGTFATEE EAAEAYDIAA IKFRGLNAVT NFEMSRYDVE AIAKSALPIG GAAKRLKLCL  420
ESDQKPIPNH DQATQCSSGS NNINFGTTVQ AVPPIPCGIP YDTAAVLYHH NYFHHLQPNA  480
IGSSESTSPG IAGLGTVAPQ AAEFFVWPRQ SY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818581e-173LN681858.1 Cucumis melo genomic scaffold, anchoredscaffold00028.
GenBankLN7132601e-173LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023550624.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1S3BU040.0A0A1S3BU04_CUCME; AP2-like ethylene-responsive transcription factor AIL6
STRINGXP_008452164.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.20.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]