PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004489
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 598aa    MW: 68584.5 Da    PI: 6.742
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004489genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.91.5e-07174196326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 ++C+++ + G+Ck+G++C++ H+
  Cla004489 174 PRICHYYNK-GFCKHGNSCRYLHS 196
                689******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.9E-6170196IPR000571Zinc finger, CCCH-type
SMARTSM003560.0021171197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.953171198IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-5173196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5174196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5164411.031221304IPR025605OST-HTH/LOTUS domain
PfamPF128721.3E-11221299IPR025605OST-HTH/LOTUS domain
Gene3DG3DSA:3.30.70.3308.4E-6338433IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549286.17E-8379456IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MEFSDYTRVV FHRISKIDPD NVKKIIGFLL LHDHGDQEMA RLALAPESHI QEVVMLAKTE  60
LHQLRSMPAP LSPPSPSQGG FIPFSIRTRQ FSTSPPSWEQ QQLTNKPTPD YIPLGYPDSM  120
YELQNPAQFF CLDDHIDPSN SGLSSFDCSY AENVLNGFST RNTRHYSNVP EFQPRICHYY  180
NKGFCKHGNS CRYLHSNLVP GSLPQMYNSH SNDDHVFRPG SLERLEFEIV DLLKSRRGSP  240
ISIASLPMIY YEKYGKVLQA EGYLTESQRH GKSGFSLTKL LTRLKNSIQV IDRPHGQHAV  300
ILAEDAPKFM DHRKDKNDPG PIVSSARQIY MTFPADSTFT EDDVSDYFRQ MLGIVLHCLG  360
LLLFQFAFIL LCLCDCSVHY GLVEDVRIPC QQRRMFGFVT FHSIETVKLI LSNDSEHLIC  420
GARVLVKPYR EKSKLLERKY HERIEQQQQD YFSSHYNNLE SEQLHSIPRG YDFSSTMLRL  480
RMGEQQQQQQ QQQCALERSL SRMTLIQKSV VNQPYFSYQM NELKLPVPEA TERFDHLMDI  540
LNVLKSGSGS SSSSSSITDD NKPPRNVTDW NHIELNNLQS EGYNLPESPF ESSTGNNT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650493.10.0PREDICTED: zinc finger CCCH domain-containing protein 18-like
TrEMBLA0A0A0L4W60.0A0A0A0L4W6_CUCSA; Uncharacterized protein
STRINGXP_008449070.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF288177