PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004419
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 166aa    MW: 18193.3 Da    PI: 6.5078
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004419genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.6e-171260255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +ykG+r ++ +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  Cla004419 12 HYKGIR-CR-SGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAALALKG 60
               69***9.55.6*********843...5************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.41E-161270No hitNo description
SMARTSM003805.4E-281274IPR001471AP2/ERF domain
PROSITE profilePS5103219.6511268IPR001471AP2/ERF domain
PfamPF008473.3E-101260IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-261269IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-181269IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MASTTSSNRH DHYKGIRCRS GKWVSEIREP RKTTRIWLGT YPTPEMAAAA YDVAALALKG  60
CNAVLNFPEL IASYPVPASS SPADIRFSAA AAAALKKVDD QGQNTDQSFH HQSLPTNEFV  120
DEEALMPNLL VDMAEGMLLS PPRMTSSPSR HDSWNSSGDG NLWSYH
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448976.12e-84PREDICTED: ethylene-responsive transcription factor ERF026-like
SwissprotQ9FJ906e-47ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A1S3BKD74e-83A0A1S3BKD7_CUCME; ethylene-responsive transcription factor ERF026-like
STRINGXP_008448976.17e-84(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-41ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]