PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004354
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 686aa    MW: 74465 Da    PI: 6.5127
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004354genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.6e-08275295526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+ f++ G C+ Gd+C +aHg
  Cla004354 275 PCPEFRK-GACPKGDSCEYAHG 295
                8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484037.93E-1568159IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.45877101IPR002110Ankyrin repeat
PROSITE profilePS5029714.71677157IPR020683Ankyrin repeat-containing domain
PfamPF127962.2E-977144IPR020683Ankyrin repeat-containing domain
SMARTSM002482.0E-477107IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.208.4E-1578159IPR020683Ankyrin repeat-containing domain
CDDcd002041.02E-1379175No hitNo description
PROSITE profilePS500889.11112147IPR002110Ankyrin repeat
SMARTSM002480.62112144IPR002110Ankyrin repeat
PROSITE profilePS5010313.939270297IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-6270296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5275296IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5275295IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.019305329IPR000571Zinc finger, CCCH-type
SMARTSM0035630305328IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MCSGSKNKVA SSNSAMEARF LKLSEGALFS ANSILLELSA SDDVEGFKRE VEEKDLDVDE  60
PSCWYGRGIG SKKMGFEERT PLMIAAMFGS SKVVKYLIET GKVDVNRACG SDLTTALHCA  120
TAGGSCSSLE TIKLLLDGSA DVDCVDAYGR KPVDLIVSSC RIVLNSGRKA MEMLLRGDGM  180
AGEGDLSLYL EEDQQKITAS QSAKEGSDKK EYPVDVSLPD INSGIYGTDD FRMYTFKVKP  240
CSRAYSHDWT ECPFVHPGEN ARRRDPRKYP YSCVPCPEFR KGACPKGDSC EYAHGVFESW  300
LHPAQYRTRL CKDETGCTRK VCFFAHKPDE LRPVYASTGS GMPSPRSLSS SAADMSTMSP  360
LALGSSSLSL PTTSTPPMSP LASVSSPKNG NLWQNKINLT PPVLQLPGSR LKATLSARDL  420
DLEMELLGLE KNASQLQHQQ QLIDEIARLS SPSYWSADVS RSAELKPANL DDMFGSLDSS  480
LLSQLQGTSL KTPISAQVQS PTGLHMRQNI NQLRASYPAN LSSSPVKKPT SFGFDSSSAV  540
AAAVMNSRSA AFAKRSQSFI DRAAVTRLPG FTGAANSAAT MSSHLSDWNS PDGKLDWGVH  600
GNDLNKLKKS ASFGIRNNGI GTPTFAPPVE EPDVSWVNSL VKDVPSESFG LFGAEKRPYS  660
LKREINETLP SWMEQQLYAE QEQIVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1348120.0KF134812.1 Cucumis melo cultivar New Silverlit zinc finger CCCH domain-containing protein 29-like protein mRNA, complete cds.
GenBankLN6819020.0LN681902.1 Cucumis melo genomic scaffold, anchoredscaffold00106.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001284654.10.0zinc finger CCCH domain-containing protein 29-like
RefseqXP_008465206.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like isoform X1
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLU3R7570.0U3R757_CUCME; Zinc finger CCCH domain-containing protein 29-like protein
STRINGXP_008465206.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein