PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla004290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | NAC | ||||||||
Protein Properties | Length: 289aa MW: 31786.8 Da PI: 8.2297 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.3 | 3.5e-54 | 7 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrFhPtdeel+ +yL kkv + +++ +i++vd++k+ePwdLp+k+ +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd+e++s+ +++l Cla004290 7 LPPGFRFHPTDEELIGHYLLKKVLNFHFSS-PAIAHVDLNKSEPWDLPEKALMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIMSSkTNSL 105 79*************************999.78***************8888899**************************************9856677 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+kktLvfykgrapkg+k++Wvmhe+rl Cla004290 106 IGMKKTLVFYKGRAPKGQKSNWVMHEFRL 134 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.67E-62 | 6 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.261 | 7 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-28 | 8 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MEGGGYLPPG FRFHPTDEEL IGHYLLKKVL NFHFSSPAIA HVDLNKSEPW DLPEKALMGE 60 KEWYFFSLRD RKYPTGLRTN RATEAGYWKA TGKDREIMSS KTNSLIGMKK TLVFYKGRAP 120 KGQKSNWVMH EFRLAGKLSY HFLSAATSKD EWVISRVFKK TGSGNGAAMH GGAMKKTRPN 180 PEPSSPSSVS LPPLLDSSPY PSAFSSAAYP DGDETREHEL HVTCFSTNNL NNDAASAFPS 240 LQENNQQAPF FSPVGPSLVH LVAAADLDGC GGGPTPDSSA DMAAYMWTF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-55 | 7 | 165 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-55 | 7 | 165 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-55 | 7 | 165 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-55 | 7 | 165 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-55 | 7 | 165 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-55 | 7 | 165 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-55 | 7 | 165 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-55 | 7 | 165 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-55 | 7 | 165 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-55 | 7 | 165 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-55 | 7 | 165 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-55 | 7 | 165 | 20 | 173 | NAC domain-containing protein 19 |
4dul_A | 2e-55 | 7 | 165 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 2e-55 | 7 | 165 | 17 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM and SYD, at the chromatin level, and conferring a very specific spatial expression pattern. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681851 | 1e-100 | LN681851.1 Cucumis melo genomic scaffold, anchoredscaffold00038. | |||
GenBank | LN713260 | 1e-100 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008456019.1 | 1e-172 | PREDICTED: protein CUP-SHAPED COTYLEDON 2-like | ||||
Swissprot | O04017 | 7e-91 | NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2 | ||||
TrEMBL | A0A1S3C1U0 | 1e-171 | A0A1S3C1U0_CUCME; protein CUP-SHAPED COTYLEDON 2-like | ||||
STRING | XP_008456019.1 | 1e-171 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3689 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53950.1 | 8e-93 | NAC family protein |