PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla004274 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | Dof | ||||||||
Protein Properties | Length: 225aa MW: 24952.8 Da PI: 8.3165 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.4 | 7.6e-39 | 33 | 92 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 k+++l+cprC+s+ntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGg++rknk+ Cla004274 33 KDQILNCPRCNSNNTKFCYYNNYSLSQPRYFCKSCRRYWTAGGSLRNIPVGGASRKNKRP 92 6899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-25 | 34 | 91 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.5E-33 | 34 | 91 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.012 | 37 | 91 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 39 | 75 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MDSAHWPQVE VKSMELEEEG IKAVVERKAK ARKDQILNCP RCNSNNTKFC YYNNYSLSQP 60 RYFCKSCRRY WTAGGSLRNI PVGGASRKNK RPSANFSSPP SKNNQKNCYN DNNNNGDDDD 120 HQGISQLNIN TTCSSTITNT ATSCCWLSSD DHMNNQIMLR SSGIMSQREL IPFIPMPAPA 180 PPQPSTAAAL EDFKQLSTII STDQNGAKLG DVPAFWNGIF GGGSW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 33 | RKAKARKD |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681851 | 0.0 | LN681851.1 Cucumis melo genomic scaffold, anchoredscaffold00038. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004146271.1 | 1e-114 | PREDICTED: dof zinc finger protein DOF1.8-like | ||||
Refseq | XP_011651310.1 | 1e-114 | PREDICTED: dof zinc finger protein DOF1.8-like | ||||
Refseq | XP_011651312.1 | 1e-114 | PREDICTED: dof zinc finger protein DOF1.8-like | ||||
TrEMBL | A0A0A0L9J3 | 1e-113 | A0A0A0L9J3_CUCSA; Uncharacterized protein | ||||
STRING | XP_004146271.1 | 1e-114 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24484 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.3 | 5e-34 | Dof family protein |