PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004223
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 326aa    MW: 37110.9 Da    PI: 4.6646
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004223genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-19104154155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  Cla004223 104 KKFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 154
                59********.**********82....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.63E-33104162No hitNo description
SuperFamilySSF541711.63E-21105162IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.9E-30105162IPR001471AP2/ERF domain
PROSITE profilePS5103223.762105162IPR001471AP2/ERF domain
PfamPF008471.0E-12105154IPR001471AP2/ERF domain
SMARTSM003809.5E-37105168IPR001471AP2/ERF domain
PRINTSPR003673.4E-10106117IPR001471AP2/ERF domain
PRINTSPR003673.4E-10128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEDTLFSPVK FTEHRNFTNK FSAKKHHHSE SRVVRISVTD PDATDSSSDE DDFFERQRVK  60
KYINEIKIQS GCRNNLLPSC RKRPAGDRSD FRRQGKVAPP TNGKKFRGVR QRPWGKWAAE  120
IRDPARRVRL WLGTYDTAEE AAMVYDNAAI QLRGPDALTN FATPPSVPVP EKEVETANIP  180
SVSGSYYDSG EESHNLSSPT SVLHFRTSSP EESEKPPNSD DLQKPPAPFV DDQFHECQGE  240
TSFCEEYHTE FPRFDYDFKL PRPESPIFLD DQPLFFEDSI WNEDFSEIFT NLPEDFGSPL  300
LSSSIGQGGD DYFQDILMGS DPLVVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21103161362ATERF1
3gcc_A3e-21103161362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149454.10.0PREDICTED: ethylene-responsive transcription factor CRF4
TrEMBLA0A0A0LB300.0A0A0A0LB30_CUCSA; Uncharacterized protein
STRINGXP_004149454.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-46cytokinin response factor 4