PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004120
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 258aa    MW: 28309.3 Da    PI: 6.4027
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004120genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.3e-1760110155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                + ++GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Cla004120  60 PVFRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALAIKG 110
                579****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-1260110IPR001471AP2/ERF domain
PROSITE profilePS5103222.61661118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-3161119IPR001471AP2/ERF domain
SMARTSM003801.7E-3561124IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2161119IPR016177DNA-binding domain
PRINTSPR003671.0E-96273IPR001471AP2/ERF domain
CDDcd000187.67E-3162120No hitNo description
PRINTSPR003671.0E-984100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
METESRILNP SPPPSPSSSG SLSTVPDHHP SSSSSSSAVE SNRKRGKRPR ENNNNNSKHP  60
VFRGVRMRAW GKWVSEIREP RKKSRIWLGT FSTPEMAARA HDVAALAIKG TAAILNFPEL  120
AHHFPRPASS SPRDVQAAAA KAAAMEIPTP SLFSSSSSAS SSSSSSSALC PSSPEELSEI  180
LELPSLGTSY ETAELGNEFV FVDSVEGWLY SYPWYNRVNN ADHQVQEDYG FFKEQILMAD  240
YTDTLIPSST FEAFLWQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1856118972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818111e-148LN681811.1 Cucumis melo genomic scaffold, anchoredscaffold00069.
GenBankLN7132561e-148LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023516296.11e-109dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD31e-67DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1S3CI751e-106A0A1S3CI75_CUCME; ethylene-responsive transcription factor TINY-like
STRINGXP_008462760.11e-107(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-53ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,B├╝low L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]