PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004098
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 375aa    MW: 41111.4 Da    PI: 6.5046
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004098genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000462392771255
                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Cla004098 239 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 277
                6678889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.534227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-7237284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.53E-6237281No hitNo description
SuperFamilySSF474595.5E-10237287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MNRGVLQSSV MQQMMGSENP NWWNMMNISG SMRSTTTQHS SPNNNNNSPN ILFPHSSLPF  60
PSNCYYDAQD HQLPESWSQL LLGGLVSEDD QKGCMGMFQS KKLEDWEEEI LNSNNNNNTQ  120
HPVDVKKEHS AQASSYVYGH GGGSSGGGGV GGDDYQLMAQ KQNWSPMIPA SSPQSCVTSF  180
SSNMLDFSNN NNNSLADHSR PRHPPQLDRS SECNSNVTGG AVKKARVQSS SNQTTFKVRK  240
EKLGDRITAL HQLVSPFGKT DTASVLLEAI GYIRFLQSQI EALSLPYLGN ASGSTRQQQQ  300
HSVQGERNCV FPEDPGQLLN ENCLKRKGVS EQEEEIKKDL RSRGLCLVPV SCTLQVGSDN  360
GADYWAPAFG GGGFR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818112e-91LN681811.1 Cucumis melo genomic scaffold, anchoredscaffold00069.
GenBankLN7132562e-91LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142511.10.0PREDICTED: transcription factor bHLH68 isoform X1
SwissprotQ8S3D15e-90BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A0A0M1200.0A0A0A0M120_CUCSA; Uncharacterized protein
STRINGXP_004142511.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-78bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]