PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004013
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Dof
Protein Properties Length: 322aa    MW: 34231 Da    PI: 9.2398
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004013genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.85.5e-3977137262
     zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                +e+ lkcprC+stntkfCy+nny+lsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+++
  Cla004013  77 PEAGLKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTK 137
                67889*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-3461130IPR003851Zinc finger, Dof-type
PfamPF027011.9E-3280135IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.76781135IPR003851Zinc finger, Dof-type
PROSITE patternPS01361083119IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MVFSSSLPSY LDPPNWQPLT NHHTGGNDTA EDSGQVLLPP PPGGGGGSDS GGVGGGTGSI  60
RPVSMTDRAR LAKIPQPEAG LKCPRCESTN TKFCYFNNYN LSQPRHFCKT CRRYWTRGGA  120
LRNVPVGGGC RRNKRTKSRN RSKSPVAGER QLLGGSANST AGVSLSTQPH VPFLSSLHNF  180
SNYGLNLGII PPQAPPSSGG STTGGVDVHE FQGDHWRLQQ PQQFPLLAND QQPNLLYTFE  240
PPEGSMTRYN LGGFSRLGIE NDMGMTTEAG AVKVEESKGM NLGKNFQFWV GGGGGSDVNA  300
WSGGGGDLHG FSSSSASHLL RQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818970.0LN681897.1 Cucumis melo genomic scaffold, anchoredscaffold00063.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147691.10.0PREDICTED: dof zinc finger protein DOF2.4
TrEMBLA0A0A0KQ920.0A0A0A0KQ92_CUCSA; Uncharacterized protein
STRINGXP_004174004.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.18e-41DNA binding with one finger 2.4