PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla003789
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 319aa    MW: 33615.4 Da    PI: 8.6141
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla003789genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-19146195255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+W+AeIrdp     + +r++lg+f+tae Aa+a++ a+++++g
  Cla003789 146 RYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFDTAEAAARAYDGAALRFRG 195
                7********.**********93....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-32146204IPR001471AP2/ERF domain
SMARTSM003803.0E-36146209IPR001471AP2/ERF domain
PfamPF008472.2E-13146195IPR001471AP2/ERF domain
CDDcd000182.67E-24146204No hitNo description
PROSITE profilePS5103225.818146203IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-22146203IPR016177DNA-binding domain
PRINTSPR003677.2E-12147158IPR001471AP2/ERF domain
PRINTSPR003677.2E-12169185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MCYLKLAKQG GDGGGDELEG MFSSSAGELM AMVSALTHVI SGGAADPSGV GYSSGSAAPT  60
TVAVATAGGC RKREREEEGE SGIMWERNRG GIVDFRAIQS YSMPSPAIFV KEEGGLSSSN  120
NISAVTAATT AATTTIAFSG VEKTRRYRGV RQRPWGKWAA EIRDPQKAAR VWLGTFDTAE  180
AAARAYDGAA LRFRGSKAKL NFPEFVSAFP PSSLPPAAHL APSPMVAPPQ DALENYLQYS  240
YLLQNSGETS SQPVPTFERV LSNSPFVNPS SSVSSSGVSD FAFPFSQQQL RNYRPPQNQS  300
QGGGGSSPTG FSYRPPATG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-23143208268ATERF1
3gcc_A7e-23143208268ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138542.21e-124PREDICTED: ethylene-responsive transcription factor ERF110-like
TrEMBLA0A0A0KBY01e-124A0A0A0KBY0_CUCSA; Uncharacterized protein
TrEMBLA0A0C7KKK21e-123A0A0C7KKK2_CUCSA; Ethylene-responsive transcription factor 114
STRINGXP_004138542.11e-124(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2447633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-30ethylene response factor 110