PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla003619
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 168aa    MW: 19246.4 Da    PI: 8.8924
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla003619genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-1787137255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIrdps   k  r++lg+f++  +Aaka++ a+ k++g
  Cla003619  87 RYRGVRRRP-WGKFAAEIRDPSR--KGSRVWLGTFDSDVDAAKAYDSAAFKIRG 137
                7********.**********854..34**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.5E-3687151IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-2287146IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-3187146IPR001471AP2/ERF domain
PROSITE profilePS5103224.30287145IPR001471AP2/ERF domain
PfamPF008472.1E-1287137IPR001471AP2/ERF domain
PRINTSPR003672.1E-138899IPR001471AP2/ERF domain
CDDcd000184.89E-2495145No hitNo description
PRINTSPR003672.1E-13127147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MKLPEEEEDD FSPLKLIQHH LLQDSDSFFT FLDFEFHSPP PIKLEFEDFK YLKPSEEEEP  60
PIQSRQEQQS PRSSSSEATS SSDGGRRYRG VRRRPWGKFA AEIRDPSRKG SRVWLGTFDS  120
DVDAAKAYDS AAFKIRGRKA KLNFPLDAGK SDPPPGNGRK KRREMAVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2685146364ATERF1
3gcc_A1e-2685146364ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1259751e-99AB125975.1 Cucumis melo CMe-ERF1 mRNA for ERF-like protein, complete cds.
GenBankLN6818951e-99LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132631e-99LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022957677.13e-76ethylene-responsive transcription factor ERF106-like
RefseqXP_022957678.13e-76ethylene-responsive transcription factor ERF106-like
TrEMBLA0A1S3ASX71e-64A0A1S3ASX7_CUCME; ethylene-responsive transcription factor ERF106-like
STRINGXP_008436978.12e-65(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.19e-35ERF family protein