PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla003506
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family G2-like
Protein Properties Length: 447aa    MW: 49503.7 Da    PI: 4.9934
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla003506genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.66.6e-34232286155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                +pr+rWtpeLHe+Fveav++LGGse+AtPk +l+lm+v+gLt++hvkSHLQkYR+
  Cla003506 232 RPRMRWTPELHEAFVEAVNKLGGSENATPKGVLKLMNVEGLTIYHVKSHLQKYRT 286
                59****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.772229289IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-31230288IPR009057Homeodomain-like
SuperFamilySSF466893.94E-18230286IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-24233286IPR006447Myb domain, plants
PfamPF002491.2E-10234285IPR001005SANT/Myb domain
PfamPF143797.0E-24317364IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MSSSYPVLPK PFEDKYPKLP LSFQGSSQSE AMRHPIPRQA PPLVSNSGTV GHLFSSSSGF  60
RNDFPLMQPL SQERNAQFSP FISRSANDES LLPPHGSSRS EVQSTMVTSS NLNENNASWS  120
ADTLQDLLDF SENVPDQNGQ EQSMAGVLMS DDQAKRIDFP DWADQFISVD DALEPNWSEI  180
FSDANAGDPK PEVLKSSSAD FHAAQNQTNQ VDSIPTAEFH SVSNSLSTST TRPRMRWTPE  240
LHEAFVEAVN KLGGSENATP KGVLKLMNVE GLTIYHVKSH LQKYRTARYK PESSEGSSGK  300
KINPIEEMKT LDLKTSMGIT EALRLQMEVQ KRLHEQLEIQ RNLQLRIEEQ GKYLQEMFEQ  360
QRKMENKLKT SSSILENMPR ADDQPENSEQ GHVAAGMNTE NAEGAREDGL PAASRKHKGH  420
ESEAIESGEG NSSSPDAKRA KSDATAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-30232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-30232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-30232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-30232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-30232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-30232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-30232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-30232290260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818080.0LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142544.10.0PREDICTED: protein PHR1-LIKE 1-like
SwissprotQ8GUN51e-101PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLA0A0A0LY820.0A0A0A0LY82_CUCSA; Uncharacterized protein
STRINGXP_004142544.10.0(Cucumis sativus)
STRINGXP_004155686.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15123498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.21e-100G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]