PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla003443

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

LBD

Protein Properties

Length: 167aa MW: 18658.3 Da PI: 8.0584

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla003443	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.6	1.1e-43	13	111	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC ++Cv+apyfp e+p+kfanvhk+FGasnv kll+++ +++r+da+ sl+yeAear+rdPvyG+vg i+ lq+q+++l++el+++k+ Cla003443 13 PCAACKFLRRKCLEGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLNDVLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQVQKLQKELDAAKA 111 7*********************************************************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.748	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.4E-44	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MGSTTTNSHY YSPCAACKFL RRKCLEGCVF APYFPPEEPQ KFANVHKVFG ASNVAKLLND 60 VLPHQRQDAV VSLAYEAEAR IRDPVYGCVG AISFLQKQVQ KLQKELDAAK ACLFLYSCTD 120 FSTPLLPPHP QIITTPHPLI WNNNLNLNLN NNNHDITNSS MYFNGGI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-61	12	122	10	120	LOB family transfactor Ramosa2.1
5ly0_B	5e-61	12	122	10	120	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	1e-176	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	1e-176	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022924080.1	3e-86	protein LATERAL ORGAN BOUNDARIES-like
Swissprot	Q9FML4	2e-61	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A0A0LTL0	8e-92	A0A0A0LTL0_CUCSA; Uncharacterized protein
STRING	XP_004152565.1	3e-88	(Cucumis sativus)
STRING	XP_004157828.1	5e-88	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24471	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	1e-54	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]