PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla003347

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 327aa MW: 37306.2 Da PI: 6.7432

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla003347	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.7	1.2e-49	24	157	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel... 99 pGfrFhPtdeelv +yLkkk+e++++++ + i+++diyk++PwdLpk + ++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+++++ Cla003347 24 PGFRFHPTDEELVGFYLKKKIENHPVSM-QLIRQLDIYKYDPWDLPKLAWTGEKEWYFYCQRDRKYRNSARPNRVTGAGFWKATGTDRPIYSTNSSNfks 122 9**********************999.89***********8777899***********************************94433455 PP NAM 100 ......vglkktLvfykgrapkgektdWvmheyrl 128 +glkk+Lvfy+gra+k+ ktdW+mhe+rl Cla003347 123 ksktiiIGLKKSLVFYTGRASKALKTDWMMHEFRL 157 556677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.24E-56	20	174	IPR003441	NAC domain
PROSITE profile	PS51005	53.985	22	174	IPR003441	NAC domain
Pfam	PF02365	2.3E-25	24	157	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MEERNELVGS VEEDDDVMLP LPLPGFRFHP TDEELVGFYL KKKIENHPVS MQLIRQLDIY 60 KYDPWDLPKL AWTGEKEWYF YCQRDRKYRN SARPNRVTGA GFWKATGTDR PIYSTNSSNF 120 KSKSKTIIIG LKKSLVFYTG RASKALKTDW MMHEFRLPDS PPNDSWAICR IFKKTNTSAA 180 QRGASSSLPK QYEKLENKEY STTINVPLST YDPFDYLEGK LPELSIPNEP FIIAPPPMEM 240 SDIAKSAMDV SSILFNISSS LLGEFGSTPA THISDPFTSS FHYHDHGHAH PDTFSSPTTL 300 LQQNALPLEH SHPCNSPLSS IWDKFLN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-52	8	182	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-52	8	182	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-52	8	182	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-52	8	182	4	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-52	8	182	7	174	NAC domain-containing protein 19
3swm_B	2e-52	8	182	7	174	NAC domain-containing protein 19
3swm_C	2e-52	8	182	7	174	NAC domain-containing protein 19
3swm_D	2e-52	8	182	7	174	NAC domain-containing protein 19
3swp_A	2e-52	8	182	7	174	NAC domain-containing protein 19
3swp_B	2e-52	8	182	7	174	NAC domain-containing protein 19
3swp_C	2e-52	8	182	7	174	NAC domain-containing protein 19
3swp_D	2e-52	8	182	7	174	NAC domain-containing protein 19
4dul_A	1e-52	8	182	4	171	NAC domain-containing protein 19
4dul_B	1e-52	8	182	4	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008441931.2	1e-156	PREDICTED: protein FEZ-like
Swissprot	Q9ZVH0	2e-82	FEZ_ARATH; Protein FEZ
TrEMBL	A0A1S3B423	1e-155	A0A1S3B423_CUCME; protein FEZ-like
STRING	XP_008441931.1	1e-156	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2013	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	4e-82	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]