PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla003307
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 313aa    MW: 34353.8 Da    PI: 10.051
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla003307genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.82.4e-10148174127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                y+t +Cr++  +G C++G +C+FaHg+
  Cla003307 148 YRTDICRYWEDSGSCRFGHKCQFAHGK 174
                89***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.0E-15146179IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-6147174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.126147175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-9147178IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7148174IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEDRQGKRSS KTPIIKGLNA SVRPINIQMD NHLVIGGTRH YHQETNCKSP TIIDRYTIMN  60
HYASSTSGSN SFSSRGAGSP LSPLSAIENL ETPRVRSPQI YGTPVKVDEE VIVMDGILIN  120
SIPGGAKTVR SPLDSGSGGG LSSGKNQYRT DICRYWEDSG SCRFGHKCQF AHGKEDLRPG  180
RLPVRTKPKF NEAYGLKSRN SHSLTGIAAT KTQSNSVDTI TKTEISKRGV TTMPSSNSVR  240
HMNIKPSLIS TISIIDWSPE DDGIKIVVPK TESTKREDVN QHIHGVLYGS TTEMTKKRLP  300
VFTQLCSGKL QQE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817971e-156LN681797.1 Cucumis melo genomic scaffold, anchoredscaffold00072.
GenBankLN7132551e-156LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148935.10.0PREDICTED: uncharacterized protein LOC101215865
RefseqXP_011658933.10.0PREDICTED: uncharacterized protein LOC101215865
TrEMBLA0A0A0K5291e-143A0A0A0K529_CUCSA; Uncharacterized protein
STRINGXP_004162743.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117801416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-07C3H family protein