PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla003039 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | NAC | ||||||||
Protein Properties | Length: 240aa MW: 27960.6 Da PI: 5.4771 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 143 | 1.7e-44 | 16 | 146 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 ppGfrF Pt+eelv++yL+++++++ e ++vi+ ++iy++ePwdLpk +++++++w+fF+ r++++++g r++r+t++gyWkatg+ v+s+ + Cla003039 16 PPGFRFYPTEEELVSFYLRHQLQTELPEKHRVIPLLNIYNFEPWDLPKsageLCRGDSEQWFFFVARQERETRGGRPSRTTAAGYWKATGSPVYVYSSAN 115 9************************9999999***************645653444777***************************************** PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +++glkkt+vfy grap+g+kt+W m+eyr+ Cla003039 116 KVIGLKKTMVFYMGRAPTGTKTKWKMNEYRA 146 *****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.11E-48 | 11 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.818 | 15 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-23 | 16 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MSMPMEEEEE SIHEYPPGFR FYPTEEELVS FYLRHQLQTE LPEKHRVIPL LNIYNFEPWD 60 LPKSAGELCR GDSEQWFFFV ARQERETRGG RPSRTTAAGY WKATGSPVYV YSSANKVIGL 120 KKTMVFYMGR APTGTKTKWK MNEYRAIDDS AKLRHEFSLC RIYVISGCFR AFDRRPMEVI 180 AAAQKTADRK MKEKVTSPET SCAAAAMAHC DGSGSNWRMD EDEEFEESIW EWEKIDWAEI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-33 | 16 | 163 | 18 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-33 | 16 | 163 | 18 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-33 | 16 | 163 | 18 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-33 | 16 | 163 | 18 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-33 | 16 | 163 | 21 | 166 | NAC domain-containing protein 19 |
3swm_B | 8e-33 | 16 | 163 | 21 | 166 | NAC domain-containing protein 19 |
3swm_C | 8e-33 | 16 | 163 | 21 | 166 | NAC domain-containing protein 19 |
3swm_D | 8e-33 | 16 | 163 | 21 | 166 | NAC domain-containing protein 19 |
3swp_A | 8e-33 | 16 | 163 | 21 | 166 | NAC domain-containing protein 19 |
3swp_B | 8e-33 | 16 | 163 | 21 | 166 | NAC domain-containing protein 19 |
3swp_C | 8e-33 | 16 | 163 | 21 | 166 | NAC domain-containing protein 19 |
3swp_D | 8e-33 | 16 | 163 | 21 | 166 | NAC domain-containing protein 19 |
4dul_A | 7e-33 | 16 | 163 | 18 | 163 | NAC domain-containing protein 19 |
4dul_B | 7e-33 | 16 | 163 | 18 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681928 | 7e-96 | LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004. | |||
GenBank | LN713266 | 7e-96 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008461272.1 | 1e-155 | PREDICTED: NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 3e-81 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A1S3CEB6 | 1e-154 | A0A1S3CEB6_CUCME; NAC domain-containing protein 90-like | ||||
STRING | XP_008461272.1 | 1e-155 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 3e-80 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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