PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla002959
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 426aa    MW: 46381.5 Da    PI: 7.2388
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla002959genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-18239288356
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                ++GVr+++ +g+WvAeIr p++   r+r++lg+f+ta eAa a++ a+  l+ge
  Cla002959 239 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAVEAAVAYDTAAYMLRGE 288
                8******9.**********955...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.40E-31237297No hitNo description
Gene3DG3DSA:3.30.730.101.5E-30238297IPR001471AP2/ERF domain
SMARTSM003802.9E-34238301IPR001471AP2/ERF domain
PROSITE profilePS5103221.614238295IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-22238296IPR016177DNA-binding domain
PfamPF008471.3E-11239288IPR001471AP2/ERF domain
PRINTSPR003679.4E-10239250IPR001471AP2/ERF domain
PRINTSPR003679.4E-10261277IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MEDQFPLIEE QKPINQKYFS SSSLQEEFVS GSYFCGDPTL WGSIVQSSRS ENGGSNGNVD  60
QSKSPSSSSS SSPPNSPSPS SSSSSSSFRL FSSEKSEISG GNLIDNIHGI ESNLHPNGQR  120
FVPLNFLETF PKQESEPFSP SPPLFQSRID STNLTLFLQE PAIVDPSPPN PFQIHAQTGL  180
QWLKNSQNQN QAAAIFAAAS RNYSDFFLGA TKTQPMKQIG RKQGNLKTES SATAVGKLFR  240
GVRQRHWGKW VAEIRLPRNR TRVWLGTFDT AVEAAVAYDT AAYMLRGEFA HLNFPDQKHR  300
LKSNSLNRTT AALLEAKLQA ITQGNSGKKK MTAVTAATIS TIDSSSISEK GLLEGDSKVL  360
NLSKNPARFS SENMAGSGGG NGGGSETGEL KRNVEGNLEI EQHFQLSRMP SLDMDMIWDA  420
LSVSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-18234295163ATERF1
3gcc_A2e-18234295163ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818450.0LN681845.1 Cucumis melo genomic scaffold, anchoredscaffold00043.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457242.10.0PREDICTED: ethylene-responsive transcription factor ERF062
TrEMBLA0A1S3C5190.0A0A1S3C519_CUCME; ethylene-responsive transcription factor ERF062
STRINGXP_008457242.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.11e-45ERF family protein