PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cla002917 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 231aa MW: 24484.4 Da PI: 6.9385 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.2 | 1.5e-39 | 37 | 138 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +C aCk+lrrkC+++C++ap+f+++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v+++l+lqqq+++l+aela++++ Cla002917 37 PCGACKFLRRKCVSGCIFAPHFASDQgAARFAAVHKVFGASNVSKLLLHIPVSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQA 136 7*************************89**********************************************************************99 PP DUF260 100 el 101 +l Cla002917 137 QL 138 85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.932 | 36 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-38 | 37 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 231 aa Download sequence Send to blast |
MADADQFPRR KPLGNKRASA ANRNPDSATA TVTALAPCGA CKFLRRKCVS GCIFAPHFAS 60 DQGAARFAAV HKVFGASNVS KLLLHIPVSR RNDAVVTISY EAQARLSDPV YGCVSTVLAL 120 QQQVASLQAE LAAVQAQLIS SRLAFAAAIQ NSQPSQVGAL QPAYSNNSSI SVSASTSAHN 180 AINLSSFASN YDLPTETAPS PHHLEPLHLP HQPIEDEEDE ENSQLPAIFA D |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-38 | 27 | 154 | 1 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-38 | 27 | 154 | 1 | 127 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 1e-103 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 1e-103 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004136784.1 | 1e-145 | PREDICTED: LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 2e-74 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A0A0LCJ9 | 1e-143 | A0A0A0LCJ9_CUCSA; Uncharacterized protein | ||||
STRING | XP_004136784.1 | 1e-144 | (Cucumis sativus) | ||||
STRING | XP_004159662.1 | 1e-144 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G03760.1 | 2e-54 | LOB domain-containing protein 20 |