PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla002907

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Dof

Protein Properties

Length: 508aa MW: 54727.3 Da PI: 6.0647

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla002907	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.4	1.6e-38	112	171	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grr+nk+ Cla002907 112 PDKIIPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRRNKQL 171 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-30	109	169	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.5E-31	114	170	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.463	116	170	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	118	154	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MTTSTTEDVI SAPHFKDLAI KLFGRTIPLP ESQISTAPLQ NPDACNNLKK AEQSVLGAED 60 SCPSERSSVL VGDNEENQAS NVTLNKGELE LPLKEEQADC NGTDQERVFK KPDKIIPCPR 120 CNSLETKFCY FNNYNVNQPR HFCKNCQRYW TAGGTMRNVP IGAGRRRNKQ LASQYRQIIV 180 SSEGVATTRL ETSDTTNHHQ LLSGVESPPT LRPSTGNSTV LKFGPEAPLC ESMETVLSLG 240 DQKRSIEIGS AYCGDSPEEP SSCGSSMTTT SIRGNELPKT IVERPEAVRL SNSSSDIAAS 300 NTVHCYPVPQ LVFPLNQGSN GIISSAMAQS SDSTSVANTS SHPNPPVQWL PATMLAVPGF 360 CTPSLPLQFV PASCWGCTPV WTATGAGNLT VVPSDICASQ TPPTAIGSCP TSSSPTLGKH 420 LRDANSLTED EKSEKCVVVP KTLRVDNPSE ASRSPIWTTF GIRPYPKETI SKGSVFETSE 480 TTNADSKGHF RDAPHILEAK TGSFYSLL

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MTTSTTEDVI SAPHFKDLAI KLFGRTIPLP ESQISTAPLQ NPDACNNLKK AEQSVLGAED  60
SCPSERSSVL VGDNEENQAS NVTLNKGELE LPLKEEQADC NGTDQERVFK KPDKIIPCPR  120
CNSLETKFCY FNNYNVNQPR HFCKNCQRYW TAGGTMRNVP IGAGRRRNKQ LASQYRQIIV  180
SSEGVATTRL ETSDTTNHHQ LLSGVESPPT LRPSTGNSTV LKFGPEAPLC ESMETVLSLG  240
DQKRSIEIGS AYCGDSPEEP SSCGSSMTTT SIRGNELPKT IVERPEAVRL SNSSSDIAAS  300
NTVHCYPVPQ LVFPLNQGSN GIISSAMAQS SDSTSVANTS SHPNPPVQWL PATMLAVPGF  360
CTPSLPLQFV PASCWGCTPV WTATGAGNLT VVPSDICASQ TPPTAIGSCP TSSSPTLGKH  420
LRDANSLTED EKSEKCVVVP KTLRVDNPSE ASRSPIWTTF GIRPYPKETI SKGSVFETSE  480
TTNADSKGHF RDAPHILEAK TGSFYSLL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004136781.1	0.0	PREDICTED: cyclic dof factor 3-like
TrEMBL	A0A0A0LBU4	0.0	A0A0A0LBU4_CUCSA; Uncharacterized protein
STRING	XP_004136781.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-58	cycling DOF factor 2