PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla002713

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 625aa MW: 71148 Da PI: 4.3881

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla002713	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	57	6.5e-18	24	159	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvka.eekewyfFskrdkkyatgk....rknra..tksgyWkatgkdkev 92 lp GfrF Ptde lv +yL +k++g + + v+ ++d+y + ePwd+ +++ + + +++yfF+k +++++++ + nr+ ++g+W+ + + + Cla002713 24 LPIGFRFMPTDEILVEHYLFNKIHGFPYSQ-AVVFDCDLYGLiEPWDIWNSFGGvDGQDLYFFTKLKRSTTKSGnlsaHINRKigSADGTWSGENSATLI 122 699**********************888.889**866*854443377899*9998886432444566652345999999999 PP NAM 93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +++ + k + + + ++ +W+mhey+l Cla002713 123 SRTgrDDQIIAYCKRFRYE-NPYLLDHHGEWIMHEYSL 159 8876566668888888886.555556899*****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-25	16	180	IPR003441	NAC domain
PROSITE profile	PS51005	26.69	24	181	IPR003441	NAC domain
Pfam	PF02365	6.3E-15	25	159	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 625 aa Download sequence Send to blast
MATAEVLGIP CTPIMEHSLL QKILPIGFRF MPTDEILVEH YLFNKIHGFP YSQAVVFDCD 60 LYGLIEPWDI WNSFGGVDGQ DLYFFTKLKR STTKSGNLSA HINRKIGSAD GTWSGENSAT 120 LISRTGRDDQ IIAYCKRFRY ENPYLLDHHG EWIMHEYSLH DSFVMPNCSN SNYVLCRLRK 180 NERPKRKATV NNKCSSKLQS MKKRVIAPMI INDMTGKNNE NEKPKRKVNK RCISKLLPEK 240 QRVVTPTIIC NIPCGPKTTT NQGISDYEPR MINDEIELQG SDMTIDQCTS DVPYKPQMTN 300 DEIELQGSHM TISQCISDVP YKSQVTNDEI ELQWSDMTIS QCTSDVPHKP QMTNDEIELQ 360 GSDMVTSQGR SDVPCKPHND EIELRVSDMT TNQGTGDVLW ASEMKQDTSD VVSCLPEMIS 420 DEIPLWESYL TTNQNTSDVF CVLEMNQSTS IVPYSLEFTT DKTKPRVPDM TTHQETTNVF 480 YTPEMNQDTD YIVSCLPEMT TDEIEPWVSD LTNKQDTGDV LWALERKQGT SDIASCLPEM 540 TSDEIEFWVS DFTTKQDTND VFRAPEMKQG TNDVVSYLPE MTSDEIEHWM SDLVTKQDTD 600 DVLWAPEMKQ GTNDIVSCLP GMTND

Sequence ? help Back to Top

Protein Sequence Length: 625 aa Download sequence Send to blast

MATAEVLGIP CTPIMEHSLL QKILPIGFRF MPTDEILVEH YLFNKIHGFP YSQAVVFDCD  60
LYGLIEPWDI WNSFGGVDGQ DLYFFTKLKR STTKSGNLSA HINRKIGSAD GTWSGENSAT  120
LISRTGRDDQ IIAYCKRFRY ENPYLLDHHG EWIMHEYSLH DSFVMPNCSN SNYVLCRLRK  180
NERPKRKATV NNKCSSKLQS MKKRVIAPMI INDMTGKNNE NEKPKRKVNK RCISKLLPEK  240
QRVVTPTIIC NIPCGPKTTT NQGISDYEPR MINDEIELQG SDMTIDQCTS DVPYKPQMTN  300
DEIELQGSHM TISQCISDVP YKSQVTNDEI ELQWSDMTIS QCTSDVPHKP QMTNDEIELQ  360
GSDMVTSQGR SDVPCKPHND EIELRVSDMT TNQGTGDVLW ASEMKQDTSD VVSCLPEMIS  420
DEIPLWESYL TTNQNTSDVF CVLEMNQSTS IVPYSLEFTT DKTKPRVPDM TTHQETTNVF  480
YTPEMNQDTD YIVSCLPEMT TDEIEPWVSD LTNKQDTGDV LWALERKQGT SDIASCLPEM  540
TSDEIEFWVS DFTTKQDTND VFRAPEMKQG TNDVVSYLPE MTSDEIEHWM SDLVTKQDTD  600
DVLWAPEMKQ GTNDIVSCLP GMTND

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	189	PKRKATV

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF557	24	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71930.1	5e-14	vascular related NAC-domain protein 7