PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla002686 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | G2-like | ||||||||
Protein Properties | Length: 305aa MW: 34201.1 Da PI: 6.3734 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.9 | 9.5e-33 | 18 | 72 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG+ekAtPk++l+lm++kgLtl+h+kSHLQkYRl Cla002686 18 KPRLRWTADLHDRFVDAVTKLGGPEKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 72 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-31 | 15 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.609 | 15 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.17E-16 | 18 | 75 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.1E-24 | 18 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.6E-9 | 20 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.9E-19 | 105 | 152 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MERNYPYENG VMMTRDPKPR LRWTADLHDR FVDAVTKLGG PEKATPKSVL RLMGLKGLTL 60 YHLKSHLQKY RLGLQTRKQN VAEQKNESSG TLSNFTGVEE DDRGMQIAEA LKSHVEVQKT 120 ILEQLEVQNK LQMRIEAQGK YLQDILEKAQ KSLALAIGSN LGSIESTGMQ LMNFDAALSD 180 QIEKFKKQEM RGGIADVNGV CKKTNDSLIQ ICKVEAGEEA TINEFNVEKN MINFDLNSKG 240 GYDYSANAAE ILDAKVLPCS RVCQATIEEY VINCFTPASY AKSLSAFATC LYSHMNEEFQ 300 KVEIP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-19 | 18 | 71 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-19 | 18 | 71 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-19 | 18 | 71 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-19 | 18 | 71 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-19 | 18 | 71 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-19 | 18 | 71 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-19 | 18 | 71 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-19 | 18 | 71 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00544 | DAP | Transfer from AT5G45580 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681829 | 1e-152 | LN681829.1 Cucumis melo genomic scaffold, anchoredscaffold00054. | |||
GenBank | LN713258 | 1e-152 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008460438.1 | 1e-176 | PREDICTED: myb family transcription factor APL | ||||
Swissprot | C0SVS4 | 2e-69 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | A0A1S3CCY3 | 1e-175 | A0A1S3CCY3_CUCME; myb family transcription factor APL | ||||
STRING | XP_008460438.1 | 1e-176 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5101 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 4e-70 | G2-like family protein |
Publications ? help Back to Top | |||
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