PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla002686
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family G2-like
Protein Properties Length: 305aa    MW: 34201.1 Da    PI: 6.3734
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla002686genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.99.5e-331872155
    G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
               kprlrWt +LH+rFv+av++LGG+ekAtPk++l+lm++kgLtl+h+kSHLQkYRl
  Cla002686 18 KPRLRWTADLHDRFVDAVTKLGGPEKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 72
               79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-311575IPR009057Homeodomain-like
PROSITE profilePS5129411.6091575IPR017930Myb domain
SuperFamilySSF466897.17E-161875IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-241872IPR006447Myb domain, plants
PfamPF002499.6E-92071IPR001005SANT/Myb domain
PfamPF143791.9E-19105152IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MERNYPYENG VMMTRDPKPR LRWTADLHDR FVDAVTKLGG PEKATPKSVL RLMGLKGLTL  60
YHLKSHLQKY RLGLQTRKQN VAEQKNESSG TLSNFTGVEE DDRGMQIAEA LKSHVEVQKT  120
ILEQLEVQNK LQMRIEAQGK YLQDILEKAQ KSLALAIGSN LGSIESTGMQ LMNFDAALSD  180
QIEKFKKQEM RGGIADVNGV CKKTNDSLIQ ICKVEAGEEA TINEFNVEKN MINFDLNSKG  240
GYDYSANAAE ILDAKVLPCS RVCQATIEEY VINCFTPASY AKSLSAFATC LYSHMNEEFQ  300
KVEIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-191871255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-191871255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-191871255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-191871255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-191871255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-191871255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-191871255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-191871255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818291e-152LN681829.1 Cucumis melo genomic scaffold, anchoredscaffold00054.
GenBankLN7132581e-152LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008460438.11e-176PREDICTED: myb family transcription factor APL
SwissprotC0SVS42e-69PHLB_ARATH; Myb family transcription factor PHL11
TrEMBLA0A1S3CCY31e-175A0A1S3CCY3_CUCME; myb family transcription factor APL
STRINGXP_008460438.11e-176(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51013142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.14e-70G2-like family protein
Publications ? help Back to Top
  1. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]