PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla002680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | NAC | ||||||||
Protein Properties | Length: 294aa MW: 34065.4 Da PI: 6.052 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 56.3 | 1.1e-17 | 16 | 148 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiyk.vePwdLpkkvka.eekewyfFskrdkkyatgk....rknratk..sgyWkatgkdkevls 94 +G++F+Ptd++l+ +yL+ k+ g + + ++d+y +ePw++ k +++ + +++yfF+k +++ +++ + nr++ +++W+ + +++++ Cla002680 16 VGVKFRPTDQQLL-HYLHCKTYGLPYFQ-GSVFDFDLYGgTEPWEIWKLFEGiDGEDLYFFTKLKRSITNSGrlsaHINRKIGlaNATWSGENSPTPIFA 113 7************.**********9655.568899998538*****854444377899********9998762222344543344899***********9 PP NAM 95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ +g k + + +++ + ++ +W+mhey+l Cla002680 114 NdaEEQIIGYCKRFRYE-NEQLQEHHGEWIMHEYSL 148 9777788********97.6666669*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.14E-21 | 9 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 20.875 | 14 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-12 | 16 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MDSSTGCLRL QLNHYVGVKF RPTDQQLLHY LHCKTYGLPY FQGSVFDFDL YGGTEPWEIW 60 KLFEGIDGED LYFFTKLKRS ITNSGRLSAH INRKIGLANA TWSGENSPTP IFANDAEEQI 120 IGYCKRFRYE NEQLQEHHGE WIMHEYSLHP NYLTCEGADP NYVLCRMRKN ERAKRKLERP 180 ELQQPRKKRI TAPKISRNER PKTKANERAE LERTEQRGMT PEMIYSAPIV PDLSTNQDVN 240 VVAHVPDMTT NQDNIDQLDM SLMLTNESTS FGTGDVPYVS LDDEFLVYLN SILT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 173 | 188 | KRKLERPELQQPRKKR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004142192.1 | 1e-139 | PREDICTED: NAC transcription factor 29-like | ||||
TrEMBL | A0A0A0KXM1 | 1e-137 | A0A0A0KXM1_CUCSA; Uncharacterized protein | ||||
STRING | XP_004165045.1 | 1e-138 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF557 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 6e-10 | NAC domain containing protein 2 |