PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla002582
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 454aa    MW: 50407.2 Da    PI: 4.7125
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla002582genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.83.3e-12141163426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                e C f+++tGtCk+G+ CkF+H+
  Cla002582 141 EDCAFYLKTGTCKFGSFCKFNHP 163
                89********************9 PP
2zf-CCCH30.75.4e-10189209525
                --SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                +C+f++rtG CkyG+ C+++H
  Cla002582 189 ECKFYLRTGGCKYGNACRYNH 209
                8******************** PP
3zf-CCCH42.61e-13216239326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                +++C++++rtG CkyG++CkF+H+
  Cla002582 216 EKECPYYMRTGSCKYGANCKFNHP 239
                579********************9 PP
4zf-CCCH24.93.4e-08340366127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C++f++tG Ck+ + Ck++H++
  Cla002582 340 PGQPECSYFLKTGDCKFKSLCKYHHPK 366
                5789*********************96 PP
5zf-CCCH35.71.4e-11388411326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                +  C +++r+G+Ck+G++CkF H+
  Cla002582 388 QNVCTYYSRYGICKFGPSCKFDHP 411
                568********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.0E-5137164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6137166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23137165IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-10141163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4143162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.108184212IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-5185211IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-7188209IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5188213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-5190210IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.939213241IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6214241IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-7215240IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-11216239IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-6219238IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014339366IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375339367IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5341366IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6383411IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-5385412IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812385413IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-9388411IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4390410IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MEPSEAVSVP NHCEAPASGF QSSQFHSSVL DPAPFDAQHV ATDDRIHAEL QKLDLKDEKE  60
ETVKDFDEGG EWEVAKNPCE DEGNDTKKID ESDRDRSVRN EDDDDDVDEE VDAGDGDGGE  120
VERKGDWRAR SNQYPVRPEA EDCAFYLKTG TCKFGSFCKF NHPVRKKNQV VSEKLKYEDD  180
SAGIASKTEC KFYLRTGGCK YGNACRYNHT RPRTDEKECP YYMRTGSCKY GANCKFNHPD  240
PTTVAVSESL SGYNNGVPLQ GASQSQITSW TSPRVLNEAT TFVPAMISPS QDSEWNGYQA  300
PIYPSEISVL PPPTYVVNNI ASETDLYSSH QQVDEYPERP GQPECSYFLK TGDCKFKSLC  360
KYHHPKNRNP KLPTCTLNDK GLPLRPDQNV CTYYSRYGIC KFGPSCKFDH PILPASSTVG  420
ELEQQPHYGN FSTAEGAEMA GGGSGNSATV EQSA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152505.10.0PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X2
SwissprotQ9STM41e-119C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A0A0LU930.0A0A0A0LU93_CUCSA; Uncharacterized protein
STRINGXP_004152505.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-121C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]