PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla002444
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family DBB
Protein Properties Length: 298aa    MW: 32546.5 Da    PI: 5.0444
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla002444genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box223.5e-07447542
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                C+ +e  e++  C  ++  lC  C +++H        H++vpl
  Cla002444  4 QCNVCEMAEATVLCCADEAALCWACDEKIHAAnklaskHQRVPL 47
               7******99*********************66899999999986 PP
2zf-B_box29.41.6e-095294137
   zf-B_box  1 seerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
               s+++kC+ ++e    +fC +++ llC++C +++H        H
  Cla002444 52 SQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTAntyvtgH 94
               689*******************************654455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.424147IPR000315B-box-type zinc finger
CDDcd000214.35E-8347No hitNo description
SMARTSM003365.3E-10447IPR000315B-box-type zinc finger
PfamPF006431.7E-5447IPR000315B-box-type zinc finger
PROSITE profilePS501199.3855299IPR000315B-box-type zinc finger
SMARTSM003367.2E-165299IPR000315B-box-type zinc finger
PfamPF006432.3E-75395IPR000315B-box-type zinc finger
CDDcd000211.26E-75599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MKIQCNVCEM AEATVLCCAD EAALCWACDE KIHAANKLAS KHQRVPLSGS SSQMPKCDIC  60
QEASGYIFCL EDRALLCRKC DVAIHTANTY VTGHQRFLLT GVKVALEPTD PVACSSMDKS  120
HSREKFTETK VRPLSEREFS MPSPDELSRS LSVLGGSEDF MANRTLLTGG GDSISGGFSQ  180
WQMDELINLT GFNQNYGYMD NGSSKADSGK LGDSDSSPVL RAADIELDDD TECSGQVPEA  240
SWTVPQIPSP PTASGLYWPR SYHNSMDGAV FVPDISCSSE KVQHCSHNGT FSKRRRQF
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818731e-162LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132611e-162LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451731.10.0PREDICTED: B-box zinc finger protein 22
SwissprotQ9SYM28e-97BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A1S3BS880.0A0A1S3BS88_CUCME; B-box zinc finger protein 22
STRINGXP_008451731.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45663453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.13e-99light-regulated zinc finger protein 1