PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla002400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | NAC | ||||||||
Protein Properties | Length: 576aa MW: 63625.2 Da PI: 5.0667 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.9 | 1.7e-52 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lp GfrF+Ptdeel+++yL+ k++g++ ++ +vi+evd++k+ePwdLp + +k+++ ew+fF+++d+ky++g+r +rat +gyWkatgkd++++s +++ Cla002400 9 LPLGFRFRPTDEELIDYYLRSKINGNHEDV-SVIREVDVCKWEPWDLPdlSIIKTKDPEWFFFCPQDRKYPNGHRLKRATVAGYWKATGKDRKIKS-GTK 106 699************************999.99**************96447788889**************************************.99* PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 l+g+kktLvfykgrapkg++t+Wv+heyr Cla002400 107 LIGMKKTLVFYKGRAPKGKRTNWVVHEYRT 136 ****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-59 | 4 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.128 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.3E-26 | 10 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0071470 | Biological Process | cellular response to osmotic stress | ||||
GO:1900426 | Biological Process | positive regulation of defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 576 aa Download sequence Send to blast |
MAVLTLNSLP LGFRFRPTDE ELIDYYLRSK INGNHEDVSV IREVDVCKWE PWDLPDLSII 60 KTKDPEWFFF CPQDRKYPNG HRLKRATVAG YWKATGKDRK IKSGTKLIGM KKTLVFYKGR 120 APKGKRTNWV VHEYRTTLKE LDGTNPGQSA FVLCRLFKKQ DESIEGSNGD EAEAAISSPT 180 TAESSPGPGD SISEPTLPLV SPSLQRPAES SDGVLSETVE HTDGSADIHG FDSYNAEMDP 240 HPDEEKKVCG SENKPLDSKL YSPLHSQLQA ELGSSGIYYS DSNYLNYEAN GNAEQLPSGT 300 EESDLIYQML DSFVYSLDDF PLEDQQEFMS LSEFPNNTMD NLDHGFFSKV EADNVKAMVM 360 PDFESSICLE DIDRKTPIIE HMGTAPPEQG QLYNISGSLQ ESYNPSSVVG STDAATGIQR 420 MSRRPRNLQQ PNEFSTFQGT APRRLRLQSK LVTPASCSSN MEKASENKTI GGNCASDGGA 480 AAVATVDVVK QPQMPNAESR SSSKASQEAS AKSVASYSSK IDFLTGKRRL ATALPPSILS 540 YVSVVRLVVV ALSIIFISIW KCSNREQRGY LVSPFC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-44 | 8 | 162 | 14 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00108 | PBM | Transfer from AT4G35580 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011653333.1 | 0.0 | PREDICTED: NAC domain-containing protein 74 | ||||
TrEMBL | A0A0A0L0H2 | 0.0 | A0A0A0L0H2_CUCSA; Uncharacterized protein | ||||
STRING | XP_004156529.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5551 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 2e-98 | NAC transcription factor-like 9 |