PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla002323 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | TCP | ||||||||
Protein Properties | Length: 241aa MW: 28002.1 Da PI: 10.0495 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 136.9 | 1.7e-42 | 89 | 222 | 2 | 127 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssgkaaksa 94 gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+s+tieWLl +++ aik+l +t +s++s + ++s+++s+ n++ ++++++ Cla002323 89 RGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASQTIEWLLLNSNSAIKDLKQTYFSNNSGVshgsvysGQSSEVVSEINNQDQEQEEAG 188 68**************************************************************555554442233445455555555556666666666 PP TCP 95 a.kskksqksaasalnlakesrakarararertr 127 ++++++k+ + + + +e r +ararar+rt Cla002323 189 GfTGSFKDKKGRQLRTVGREARDRARARARQRTL 222 6799********9******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.8E-39 | 90 | 225 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.092 | 91 | 149 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MYQQEQYEDQ LINSYDDLHF PHPFLDDDDL FLSHFLSQQQ QQQQLFEQEE KQDHEVDETT 60 RKMKTKTKKK KVSGGNSSRK NGRSCTKRRG KKDRHSKIYT AQGPRDRRMR LSLQIARKFF 120 DLQDMLGFDK ASQTIEWLLL NSNSAIKDLK QTYFSNNSGV SHGSVYSGQS SEVVSEINNQ 180 DQEQEEAGGF TGSFKDKKGR QLRTVGREAR DRARARARQR TLLKNTSFLQ PPINLDHHLS 240 G |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 209 | 219 | RDRARARARQR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 1e-97 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 1e-97 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011656248.1 | 2e-83 | PREDICTED: transcription factor TCP12 | ||||
TrEMBL | A0A0A0KRR2 | 5e-82 | A0A0A0KRR2_CUCSA; Uncharacterized protein | ||||
STRING | XP_008437699.1 | 6e-68 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 2e-29 | TCP domain protein 12 |