PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla002257
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Trihelix
Protein Properties Length: 285aa    MW: 32328.7 Da    PI: 10.0003
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla002257genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.65e-1619109186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +Wt +++ +Li a  e++ +l+rg+l+ ++W+ev++++     +er+  r+++qCk++++ l+++yk +k++ ++     +  +p+f+ l+
  Cla002257  19 CWTLDHTSTLIHAWGERHLDLNRGSLRHKHWQEVADAVnsshgHERKSVRTAIQCKNRIDTLKRKYKIEKARIEESGGSYVCAWPFFSCLD 109
                7**************************************99999999999********************998887677777999999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.1E-2217110No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MPLSHPSPSA STVPVREDCW TLDHTSTLIH AWGERHLDLN RGSLRHKHWQ EVADAVNSSH  60
GHERKSVRTA IQCKNRIDTL KRKYKIEKAR IEESGGSYVC AWPFFSCLDD LIGNSHKAST  120
SVGVSNSKSS PVTTPRLSLF SKVPVARRSG TKKRRSTHVY RSFCDSYLRR DVNSNEDGGK  180
DGLDSANSLS SPGFKDRDTG YRKLAEAIGT ITDIYERVEV AKQRHMVELE IQRMQFVKDL  240
EYQRMQLLME THLQIQKIKR ARRASGAGEA LASNSICHFL YLFLL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022969203.11e-171trihelix transcription factor ASIL1-like
TrEMBLA0A0A0K3T31e-150A0A0A0K3T3_CUCSA; Uncharacterized protein
STRINGXP_004155517.11e-152(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.13e-59sequence-specific DNA binding transcription factors