PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla002243

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

WRKY

Protein Properties

Length: 300aa MW: 31750.8 Da PI: 5.2219

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla002243	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	91.2	8.4e-29	76	134	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+ ++itY +Hnh+ Cla002243 76 SDPWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTKLVITYAFDHNHQ 134 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.7E-30	67	136	IPR003657	WRKY domain
SuperFamily	SSF118290	7.85E-25	71	136	IPR003657	WRKY domain
SMART	SM00774	1.5E-33	75	135	IPR003657	WRKY domain
PROSITE profile	PS50811	30.963	76	136	IPR003657	WRKY domain
Pfam	PF03106	1.3E-24	77	134	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MDRRVRTNPF VSEQEDPEAT SDDGSPESPS DGNDSKSASA GPPPKKSRRG VQKRVVSVPI 60 GDVEGSKSKG EAYPPSDPWA WRKYGQKPIK GSPYPRGYYR CSSSKGCPAR KQVERSRVDP 120 TKLVITYAFD HNHQLPATKS HHHHHNSSPS SAAIAAASTA ADSSSPGSTT TSSSTSSGDN 180 TNAAPSSPAA AAKFEEAAAV FASQPELELG GDSLMIKPCI GDFGWLADVA YDRILEGPIC 240 GGGDIFDDAD VMVLSTTGDD EEESLFADLG ELPEGSVVFG RRRPVQPDGP NRTCGRVLDC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-18	53	137	6	80	Disease resistance protein RRS1
5w3x_D	2e-18	53	137	6	80	Disease resistance protein RRS1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU984033	0.0	GU984033.1 Cucumis sativus WRKY protein (WRKY47) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008455292.1	1e-172	PREDICTED: probable WRKY transcription factor 69 isoform X1
Refseq	XP_016901678.1	1e-172	PREDICTED: probable WRKY transcription factor 69 isoform X1
TrEMBL	A0A1S6YJF1	1e-174	A0A1S6YJF1_LUFAE; WRKY transcription factor 1-like protein
STRING	XP_008455292.1	1e-171	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2770	34	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58710.1	3e-57	WRKY DNA-binding protein 69