PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla002217
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NAC
Protein Properties Length: 310aa    MW: 35979.6 Da    PI: 5.5781
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla002217genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.11.2e-17161483128
        NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiyk.vePwdLpkkvka.eekewyfFskrdkkyatgk....rknratk..sgyWkatgkdkevls 94 
                +G++F+Ptd++l+ +yL+ k+ g +      + ++d+y  +ePw++ k +++ + +++yfF+k +++ +++     + nr++   +++W+   + +++++
  Cla002217  16 VGVKFRPTDQQLL-HYLHCKTYGLPYFQ-GSVFDFDLYGgTEPWEIWKLFEGiDGEDLYFFTKLKRSITNSGrlsaHINRKIGlaNATWSGENSPTPIFA 113
                7************.**********9655.568899998538*****854444377899********9998762222344543344899***********9 PP

        NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                +  +++ +g  k + +  +++ + ++ +W+mhey+l
  Cla002217 114 NdaEEQIIGYCKRFRYE-NEQLQEHHGEWIMHEYSL 148
                9777788********97.6666669*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-219169IPR003441NAC domain
PROSITE profilePS5100520.87514170IPR003441NAC domain
PfamPF023652.4E-1216148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDSSTGCLRL QLNHYVGVKF RPTDQQLLHY LHCKTYGLPY FQGSVFDFDL YGGTEPWEIW  60
KLFEGIDGED LYFFTKLKRS ITNSGRLSAH INRKIGLANA TWSGENSPTP IFANDAEEQI  120
IGYCKRFRYE NEQLQEHHGE WIMHEYSLHP NYLTCEGADP NYVLCRMRKN ERVKRKLERQ  180
SELQEPRKKR ITAPKIPHNE RLKTKANERA ELQMTEQRVI TPEMIYNAPV MLDVTTNQDV  240
NVVAHVPYMS TNQDVNVVAH MPDMTTNQDN IEQLDMSLML TNESTSCSNG DVPYVSLDDE  300
FLDYLNAILT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173189KRKLERQSELQEPRKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142192.11e-135PREDICTED: NAC transcription factor 29-like
TrEMBLA0A0A0KXM11e-134A0A0A0KXM1_CUCSA; Uncharacterized protein
STRINGXP_004165045.11e-135(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-09NAC domain containing protein 2