PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla002099 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | TCP | ||||||||
Protein Properties | Length: 312aa MW: 33447.1 Da PI: 6.5662 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 123.5 | 2.4e-38 | 68 | 172 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg............. 88 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ a++ s+s++ s + Cla002099 68 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSQQGASLSaglhqkleelggg 167 789******************************************************************9995555555554333333454444455555 PP TCP 89 ....k 89 + Cla002099 168 gssrA 172 44440 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.5E-32 | 73 | 173 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.016 | 74 | 128 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MDPKTKTSST TKQPQEVVAN FLKPPEEEEE EHLEEVDEES IMGENKAGEI KDFQIAIAEK 60 EEGKKQLAPK RSSNKDRHTK VEGRGRRIRM PALCAARIFQ LTRELGHKSD GETIQWLLQQ 120 AEPSIIAATG TGTIPASALA AAAGSVSQQG ASLSAGLHQK LEELGGGGSS RANWGNLGRP 180 HLAATPSGLW PSSVTGFGFH SSTASAAAVA AQSATNLPNE TSNYFHKLGF PPFDCSPTNM 240 GPMSFTSILG ANTQQLPGLE LGLSQDGHIG VLNPQALNQI YQQMGQPRVH QQHHHQHHHQ 300 QAPAKDDSQD SG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00636 | PBM | Transfer from Glyma.19G095300 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681857 | 0.0 | LN681857.1 Cucumis melo genomic scaffold, anchoredscaffold00023. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004148022.1 | 1e-174 | PREDICTED: transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 8e-79 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A0A0L891 | 1e-172 | A0A0A0L891_CUCSA; Uncharacterized protein | ||||
STRING | XP_004148022.1 | 1e-173 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3339 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 3e-72 | TCP family protein |