PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla002039
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 249aa    MW: 28093.4 Da    PI: 4.9572
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla002039genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-1983133155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                ++++GVr+++ +g+++AeIrdp++   r+r++lg+f+++eeAa  +++a+ +++g
  Cla002039  83 KKFRGVRRRP-WGKFAAEIRDPTK---RTRIWLGTFDSPEEAAIVYDQAAIRFRG 133
                59********.**********975...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.84E-3083139No hitNo description
Gene3DG3DSA:3.30.730.104.5E-2784139IPR001471AP2/ERF domain
PROSITE profilePS5103221.94484141IPR001471AP2/ERF domain
PfamPF008471.0E-1184133IPR001471AP2/ERF domain
SMARTSM003809.0E-3584147IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-2084140IPR016177DNA-binding domain
PRINTSPR003673.6E-98596IPR001471AP2/ERF domain
PRINTSPR003673.6E-9107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MSAAHSRFKF RERRSVTGMS LPPDSSAPRI VRIFVTDSDA TDTSSSDDDD DDAELVRLVC  60
RHINEIRLHD STHSKLKQVE PNKKFRGVRR RPWGKFAAEI RDPTKRTRIW LGTFDSPEEA  120
AIVYDQAAIR FRGPDALTNI VKPPQRNPPP EDVCDSSMEI VDDHATVSRG GMRCSPTSVL  180
RDHDCCVAAA EMFGDEMEFM DNYYRPPRIF LEETSFPETA MFCGGLCDGA VDLDGNFGSC  240
KWDVGTYFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2083139461ATERF1
3gcc_A7e-2083139461ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008445792.11e-130PREDICTED: ethylene-responsive transcription factor CRF6-like
SwissprotQ9M3743e-38CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBLA0A1S3BE801e-129A0A1S3BE80_CUCME; ethylene-responsive transcription factor CRF6-like
STRINGXP_008445792.11e-129(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2445033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.17e-37cytokinin response factor 6