PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla001881
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ZF-HD
Protein Properties Length: 305aa    MW: 33718.9 Da    PI: 8.6025
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla001881genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.84.7e-3281138260
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                  ++v+YkeClkNhAas+Gg+a+DGCgEfmps geeg+++al+C+AC+CHRnFHR+e e e
    Cla001881  81 KHVKYKECLKNHAASMGGNATDGCGEFMPS-GEEGSIEALTCSACNCHRNFHRKEIEGE 138
                  679**************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-2683138IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.8E-2983135IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.0E-3284135IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.40185134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.57E-20223291IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-31225292IPR009057Homeodomain-like
TIGRFAMsTIGR015658.8E-28230286IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDLTTQDPPI PIPIPIPLNS RYGGHDHDHI IHHHHDPSAT RNHIIAATIN GGSPLPTSQM  60
EVDLHHHNNN NNNNSSNNNK KHVKYKECLK NHAASMGGNA TDGCGEFMPS GEEGSIEALT  120
CSACNCHRNF HRKEIEGESY DWLHPSRLGR KLLVGGKNMI APPEAAAFAY PTPTGAAFIS  180
SRAATAQPHH MIMSYNMLGG GGGHSESEEQ EEATGAGVGG RVYSGPMMNK KRFRTKFTAE  240
QKEKMLRFAE KVGWKIQKQE ESVVQQFCQE IGVKRRVLKV WMHNNKHNLA KKDIISPSHS  300
PNPLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-242312881875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819100.0LN681910.1 Cucumis melo genomic scaffold, anchoredscaffold00056.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023530544.11e-163zinc-finger homeodomain protein 4-like
SwissprotQ9M9S02e-72ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A345BTG51e-161A0A345BTG5_CUCPE; ZFP2
STRINGXP_008460585.11e-158(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.27e-71homeobox protein 31