PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla001818

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Dof

Protein Properties

Length: 340aa MW: 35448.2 Da PI: 9.2106

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla001818	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.6	3.3e-39	70	128	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++ Cla001818 70 GQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKST 128 57899****************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.1E-32	71	127	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.516	73	127	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-25	73	125	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	75	111	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MIQELFGVSG LLAAAGDTKI SINGSILDSS PSTSLSASAT AATTATITTT TTAAASTANA 60 TSTTSSISEG QNLRCPRCDS SNTKFCYYNN YNLTQPRHFC KTCRRYWTKG GALRNVPIGG 120 GCRKNKSTAA TVAAAVGKSA AGKMKTLSSE ILGRVGFRNG SALDHEIISS PKQILWGSPQ 180 NSHLLAILRS ATQNPNPNNL AASHVINNDP PPSTPFHART MGFDDPVAAT HISSLGLCSS 240 YWRNNQTQVH HQQNGYPHGG GDQVHGGAGG IKELYQKIKS SSNNYFTDGH QGSVGVTSVG 300 TTTTAAILEA APVGGGETTG FWNPAFSWSD VHASANGAYP

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008440237.1	0.0	PREDICTED: dof zinc finger protein DOF5.3-like
TrEMBL	A0A1S3B085	0.0	A0A1S3B085_CUCME; dof zinc finger protein DOF5.3-like
STRING	XP_008440237.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7219	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	9e-33	Dof family protein