PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla001808
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 362aa    MW: 41575 Da    PI: 9.8724
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla001808genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.42.2e-121811799
               E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..EEEEE-S CS
         B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsefelvvkvfrk 99
               ++pk f++++g+    s  + l+ ++g +W+v l+ +   g+++l+kGW +F +   L+ g  +vF+l  gr++ ++ v++f+ 
  Cla001808  1 MIPKIFVKDYGKL--LSSFVFLKLPDGMEWKVGLT-TAANGAVWLQKGWDKFLEHYCLEFGSLLVFRLLdGRKSSSFDVTIFDP 81
               69********844..777899999**********4.555567*************************65276999899999985 PP
2B362.47.4e-20153242190
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                f+ v+++s+v+ + ++ +p kfa+++  ++ +   ++l++++gr+W v +++++++++   ++ +GW+ Fv++n Lk+gD+v F+ +++++f
  Cla001808 153 FKVVMSQSNVGGRFNMAIPEKFARKYLCEEFG--SISLQTTNGRKWAVLYKWSRNKDEkvAYFCSGWRVFVQENLLKAGDVVFFEPIKKHRF 242
                78899*********************544334..6*****************5555555899999********************8876666 PP
3B347.33.7e-15269360197
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                ffkv ++  +  ++ l +p  fa++h +++    +l++++   ++W+v+l  +++ ++  +++GW++F ++ngL++g +++F+++++++  ++v++f
  Cla001808 269 FFKVKIHLKSYGNAVLNIPMGFAKKHLSPEMYYAKLQVRN---KEWNVTL--KQYESHSRFSAGWSKFYHENGLRDGNTCLFEMVSKTNCIFKVTIF 360
                89************************77765555566555...*******..888888889**********************88664443577766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.06E-15182IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.029182IPR003340B3 DNA binding domain
PfamPF023626.2E-9180IPR003340B3 DNA binding domain
CDDcd100172.82E-10180No hitNo description
SMARTSM010190.028182IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-15283IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-21147247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-21148247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-18151239No hitNo description
PROSITE profilePS5086314.184153250IPR003340B3 DNA binding domain
PfamPF023621.0E-17153243IPR003340B3 DNA binding domain
SMARTSM010199.2E-13153250IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-18264361IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-17264361IPR015300DNA-binding pseudobarrel domain
PfamPF023627.4E-12269360IPR003340B3 DNA binding domain
CDDcd100173.84E-12269361No hitNo description
PROSITE profilePS5086312.703269362IPR003340B3 DNA binding domain
SMARTSM010191.3E-7269358IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MIPKIFVKDY GKLLSSFVFL KLPDGMEWKV GLTTAANGAV WLQKGWDKFL EHYCLEFGSL  60
LVFRLLDGRK SSSFDVTIFD PTGVETQYSC NVNNCTPDSD CDESLEGFEG LLKKRKKASV  120
PCFRSCKKTR KQDSFSIKVE PVEEGESTEK PGFKVVMSQS NVGGRFNMAI PEKFARKYLC  180
EEFGSISLQT TNGRKWAVLY KWSRNKDEKV AYFCSGWRVF VQENLLKAGD VVFFEPIKKH  240
RFLFTKLQDT APFSSPSPNN KIASTRNPFF KVKIHLKSYG NAVLNIPMGF AKKHLSPEMY  300
YAKLQVRNKE WNVTLKQYES HSRFSAGWSK FYHENGLRDG NTCLFEMVSK TNCIFKVTIF  360
NK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-1326736046140B3 domain-containing transcription factor VRN1
4i1k_B5e-1326736046140B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112116KKRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818753e-65LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132623e-65LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657840.11e-169PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0A0KL641e-168A0A0A0KL64_CUCSA; Uncharacterized protein
STRINGXP_008440223.11e-167(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-14B3 family protein