PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla001783

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

TALE

Protein Properties

Length: 697aa MW: 76275.8 Da PI: 6.8969

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla001783	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.4	5.6e-09	506	543	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Cla001783 506 FEHflHPYPSDADKLLLARQTGLSRNQVSNWFINARVR 543 664559******************************88 PP
2	BELL	115.8	2.2e-37	366	437	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+l+eV++rY+ y+eq+q+v++sF+ v+g g+a+pYt+l +ka+SrhFrcLkdaiaeq+ Cla001783 366 DRIEHQRRKVKLLSMLDEVERRYNLYREQMQMVVNSFDLVMGFGAAAPYTTLTQKAMSRHFRCLKDAIAEQL 437 589*******************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	7.2E-71	298	435	IPR006563	POX domain
Pfam	PF07526	5.2E-49	303	434	IPR006563	POX domain
PROSITE profile	PS50071	12.519	484	547	IPR001356	Homeobox domain
CDD	cd00086	1.08E-12	487	548	No hit	No description
SMART	SM00389	5.3E-10	487	551	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.92E-17	488	555	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.5E-28	490	553	IPR009057	Homeodomain-like
Pfam	PF05920	7.4E-18	504	543	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence Send to blast
MGIAKGPLIL SNKATSCANS SMSHDYHHHH HQGIFTFSNG TLDKSNSSTL PQHIRPEKLR 60 LDAFSAPIPP STVAEIDEHH PHHHHQQQLH HVYATTPSGG TMLSDMFNFP PTTPSAPVPV 120 EFSDNFRTLR PPNSASAMQL FLMNPPPPPQ PQPRSPSPAS TSSTLHMLLP NPPANALQGF 180 EGGVGVGDQT AFGQFAVVES QGLSLSLHSS SLQHLEDAAA AAAAVAKADE LRIRDGGILY 240 NYNNNNNQVL DGGDGGSGST SSILHYSFRN NENSPHSFQA PQIMNPNHQV QIGFGSSLGV 300 VNVLRNSKYA KPAQELLEEF CSVGKVQLKK NKFNIKPNPD TETATTSAAT TGGSTSKDQP 360 PLSAADRIEH QRRKVKLLSM LDEVERRYNL YREQMQMVVN SFDLVMGFGA AAPYTTLTQK 420 AMSRHFRCLK DAIAEQLKQS YEALGEKGGN GGSGITKGET PRLKLLEQSL RQQRAFHQMG 480 MMEQEAWRPQ RGLPERSVNI LRAWLFEHFL HPYPSDADKL LLARQTGLSR NQVSNWFINA 540 RVRLWKPMVE EMYQLEGKVD TDESQDDTTH NNNNNKTQNN PINNSQNPTP TTAPPPSAST 600 VEEVAAEFTA AHEYSDLHDV WRHGSSGDHQ QHYGTMSEDV TTAAADMHPG PTLIRFGTTN 660 TATGDVSLTL GLRHTGSTSA AAAADNPSFS LRDFGHS

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence Send to blast

MGIAKGPLIL SNKATSCANS SMSHDYHHHH HQGIFTFSNG TLDKSNSSTL PQHIRPEKLR  60
LDAFSAPIPP STVAEIDEHH PHHHHQQQLH HVYATTPSGG TMLSDMFNFP PTTPSAPVPV  120
EFSDNFRTLR PPNSASAMQL FLMNPPPPPQ PQPRSPSPAS TSSTLHMLLP NPPANALQGF  180
EGGVGVGDQT AFGQFAVVES QGLSLSLHSS SLQHLEDAAA AAAAVAKADE LRIRDGGILY  240
NYNNNNNQVL DGGDGGSGST SSILHYSFRN NENSPHSFQA PQIMNPNHQV QIGFGSSLGV  300
VNVLRNSKYA KPAQELLEEF CSVGKVQLKK NKFNIKPNPD TETATTSAAT TGGSTSKDQP  360
PLSAADRIEH QRRKVKLLSM LDEVERRYNL YREQMQMVVN SFDLVMGFGA AAPYTTLTQK  420
AMSRHFRCLK DAIAEQLKQS YEALGEKGGN GGSGITKGET PRLKLLEQSL RQQRAFHQMG  480
MMEQEAWRPQ RGLPERSVNI LRAWLFEHFL HPYPSDADKL LLARQTGLSR NQVSNWFINA  540
RVRLWKPMVE EMYQLEGKVD TDESQDDTTH NNNNNKTQNN PINNSQNPTP TTAPPPSAST  600
VEEVAAEFTA AHEYSDLHDV WRHGSSGDHQ QHYGTMSEDV TTAAADMHPG PTLIRFGTTN  660
TATGDVSLTL GLRHTGSTSA AAAADNPSFS LRDFGHS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	4e-16	493	551	5	63	Homeobox protein Meis2
3k2a_B	4e-16	493	551	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269\|PubMed:17873098}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008440170.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Swissprot	Q94KL5	1e-144	BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBL	A0A1S3B182	0.0	A0A1S3B182_CUCME; BEL1-like homeodomain protein 4
STRING	XP_008440170.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3524	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-125	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]