PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla001654 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | bHLH | ||||||||
Protein Properties | Length: 253aa MW: 28249.2 Da PI: 7.6658 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.4 | 5.9e-14 | 79 | 131 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iNs ++ Lr llP+ + + kKls ++ + YI +Lq Cla001654 79 KKLSHNASERDRRRKINSLYSSLRALLPStD---QMKKLSNPATISRILSYIPELQ 131 6789*************************77...9999***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.367 | 78 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.15E-15 | 78 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-11 | 79 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.73E-13 | 79 | 135 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-13 | 79 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.7E-10 | 84 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MLALSSPLFS PHQWPLEDPI SLHHQNNSLF SPFEASDHSF YLQFPSSPPL QPPNTELDHY 60 PSSATPSPKG GSNISKMAKK LSHNASERDR RRKINSLYSS LRALLPSTDQ MKKLSNPATI 120 SRILSYIPEL QQQVEGLIGK KEELMAAMVG REVKNDEEKK TKCAASSSSS IISASRLSRW 180 EMAIQISTDI NGGYRNSLSE ILVCLEEEGL LLLNASSFES FDGKVFHNLH LQMGSNCRME 240 PKMLSTKLLE MFP |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681878 | 1e-124 | LN681878.1 Cucumis melo genomic scaffold, anchoredscaffold00036. | |||
GenBank | LN713262 | 1e-124 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004144337.2 | 1e-139 | PREDICTED: transcription factor bHLH100-like | ||||
TrEMBL | A0A1S3C272 | 1e-131 | A0A1S3C272_CUCME; transcription factor bHLH100-like | ||||
STRING | XP_004170119.1 | 1e-139 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2402 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 2e-29 | bHLH family protein |