PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla001506

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

TCP

Protein Properties

Length: 285aa MW: 30795.3 Da PI: 9.1123

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla001506	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.7	8.6e-38	57	142	2	88
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 a+k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg+++++as+ +++ +s ++++ss Cla001506 57 APKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASAL-HVAGVSLSDHDSSV 142 789******************************************************************777.33333333333332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.2E-32	61	156	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.381	63	117	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MADHNNNNSN NNNKPSVAAS STPITPLPPS SDIKDFSLII ANKDQNKKQQ QQQQQLAPKR 60 TSNKDRHKKV DGRGRRIRMP ALCAARVFQL TRELGHKTDG ETIQWLLQQA EPSIIAATGS 120 GTIPASALHV AGVSLSDHDS SVSVSATLTP KIDAVPRSNW AMMGANLNRS HMATPGFWPS 180 LGGIGTGFVS ENSGSIMPKF GFHGFEFQGM NLGSVNFPTI IGNQHQQIPG LELGLSQDGN 240 NLRGMLNPPS YSQIYHQIGQ NRESSAAAPL EQDQAPDKDD SQESR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008459878.1	1e-159	PREDICTED: transcription factor TCP20-like
Refseq	XP_016902500.1	1e-159	PREDICTED: transcription factor TCP20-like
Refseq	XP_022954371.1	1e-159	transcription factor TCP20-like
Refseq	XP_023513595.1	1e-159	transcription factor TCP20-like
Refseq	XP_023516180.1	1e-159	transcription factor TCP20-like
Swissprot	Q9LSD5	9e-73	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A1S3CAQ4	1e-158	A0A1S3CAQ4_CUCME; transcription factor TCP20-like
STRING	XP_008459878.1	1e-158	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3339	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	5e-65	TCP family protein

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]