PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla001495
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NAC
Protein Properties Length: 256aa    MW: 29219 Da    PI: 9.5128
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla001495genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1661.3e-51141381128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+ev+++k++PwdLp +    e+e yfFs+r+ ky++g+r+nrat+sgyWkatg dk+v+++ ++++
  Cla001495  14 LPPGFRFHPTDEELVVQYLKRKVLSCPLPA-SIIPEVEVCKADPWDLPGN---MEQERYFFSTREAKYPNGNRSNRATSSGYWKATGIDKQVVASkGNQV 109
                79****************************.89***************54...46799*********************************999857778 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vglkktLvfy+g+ p+g++tdW+mheyrl
  Cla001495 110 VGLKKTLVFYRGKPPHGSRTDWIMHEYRL 138
                ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-5910173IPR003441NAC domain
PROSITE profilePS5100556.95614173IPR003441NAC domain
PfamPF023652.9E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEKLNFVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVLSCP LPASIIPEVE VCKADPWDLP  60
GNMEQERYFF STREAKYPNG NRSNRATSSG YWKATGIDKQ VVASKGNQVV GLKKTLVFYR  120
GKPPHGSRTD WIMHEYRLAC PPTVCFNASQ EKSPFQSSVA PMENWVLCRI FLKKRNGHQN  180
EEEKNTSSNT NNRKPRMGKP VFYDFMRKER AETDLNLAPS SSSSGSSGIT EISNNELDDH  240
EESSSCNSFP YFRRKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-501217915171NO APICAL MERISTEM PROTEIN
1ut4_B3e-501217915171NO APICAL MERISTEM PROTEIN
1ut7_A3e-501217915171NO APICAL MERISTEM PROTEIN
1ut7_B3e-501217915171NO APICAL MERISTEM PROTEIN
4dul_A3e-501217915171NAC domain-containing protein 19
4dul_B3e-501217915171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819251e-111LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132651e-111LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140548.11e-173PREDICTED: NAC domain-containing protein 18
SwissprotQ9FY931e-110NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0A0KAC91e-171A0A0A0KAC9_CUCSA; Uncharacterized protein
STRINGXP_004140548.11e-172(Cucumis sativus)
STRINGXP_004173907.11e-172(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-107NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]