PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla001409
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRAS
Protein Properties Length: 545aa    MW: 60838.7 Da    PI: 6.5543
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla001409genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS450.79.3e-1381765452374
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                ++ L++cA+avs++d+ +aq+l+ +l++++s  g+pmqRl ay++e+L arla+s+s +yk+l+++e +    +e l++++l++ev+P++kf+++ aN a
  Cla001409 176 KKILIACAKAVSDSDALMAQWLMDELRKMVSVCGEPMQRLGAYMLEGLVARLASSGSCIYKSLRCKEPA---RAELLSYMHLLYEVCPYFKFGYMSANGA 272
                789*****************************************************************9...89************************** PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                I ea++ e+rvHiiDf+isqG+QW++L+qa+a Rp+gpp++RiTg+++p+s   +   l  +g+rL+k+A+ ++vpfef+  +a +  d++ ++L +++g
  Cla001409 273 IAEAMKDEDRVHIIDFQISQGTQWITLIQAFAGRPGGPPHIRITGIDDPASAyaRGGGLDIVGKRLSKLAKLFNVPFEFHS-AAISGCDVQQNNLGIRRG 371
                **************************************************9999999************************.888999************ PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                EalaVn++++lh+++desvs+e++rd++L+lvk+lsPkvv++veqe+++n++ F  rf+e+l+yy a+f+s++++lpr+++eri++E+++l+re+vn++a
  Cla001409 372 EALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTLVEQESNTNTAAFYPRFIETLDYYNAMFESIDVTLPRQHKERINIEQHCLAREVVNILA 471
                **************************************************************************************************** PP

       GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                cegaer+erhe l+kWr r+ +aGF+p+pls+ +++++k+ll +++++ yr+ee++g+l+lgW+dr Lv+ +aW+
  Cla001409 472 CEGAERVERHELLGKWRLRFAMAGFTPYPLSSLVNATIKTLLDNYSNR-YRLEEREGALYLGWMDRDLVASCAWK 545
                **********************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.893149526IPR005202Transcription factor GRAS
PfamPF035143.2E-135176545IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MQASQLHRGS HMSKRLCYQP LQEVDAYCFS QFQSLGRHLY SSAGNQRAQF NVQDIGDRYC  60
TLESSSGSHG YAAHNSTSTV TFSPNGSPVS QQDSRSNPSD QHNSPDNTYG SSVSGSSITN  120
DISDFRHKLL ELETVMLGPD SDVSDSFDSI YTEGTDNPEM GTWGQAVDAI TKRNLKKILI  180
ACAKAVSDSD ALMAQWLMDE LRKMVSVCGE PMQRLGAYML EGLVARLASS GSCIYKSLRC  240
KEPARAELLS YMHLLYEVCP YFKFGYMSAN GAIAEAMKDE DRVHIIDFQI SQGTQWITLI  300
QAFAGRPGGP PHIRITGIDD PASAYARGGG LDIVGKRLSK LAKLFNVPFE FHSAAISGCD  360
VQQNNLGIRR GEALAVNFAF MLHHMPDESV STENHRDRLL RLVKGLSPKV VTLVEQESNT  420
NTAAFYPRFI ETLDYYNAMF ESIDVTLPRQ HKERINIEQH CLAREVVNIL ACEGAERVER  480
HELLGKWRLR FAMAGFTPYP LSSLVNATIK TLLDNYSNRY RLEEREGALY LGWMDRDLVA  540
SCAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-611795458375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819170.0LN681917.1 Cucumis melo genomic scaffold, anchoredscaffold00085.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140012.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_011656879.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_011656880.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A0A0KA550.0A0A0A0KA55_CUCSA; Uncharacterized protein
STRINGXP_004140012.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]