PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla001399
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family SAP
Protein Properties Length: 448aa    MW: 49601.1 Da    PI: 6.7895
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla001399genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP700.32.1e-21324482454
        SAP   2 ssssssssseseegseggeggdassgesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvfqvcstwravsrsdllwqrltrriW 101
                sss+   ss+s  g        +++g+++gpsssr+r anevwpePf+ealatqvaidasrslGr+ aa al nvfqvcstwravsrs+llw+rlt riW
  Cla001399   2 SSSAP--SSSSFGGG----RRRRGGGDFDGPSSSRRRGANEVWPEPFVEALATQVAIDASRSLGRIHAAAALSNVFQVCSTWRAVSRSELLWHRLTTRIW 95 
                33333..33233332....333445799************************************************************************ PP

        SAP 102 rrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdletrlhvstflpqhrdrlGrfsrav 201
                 r+ +l dtWr+ey+y+h tarnfr +r+ +++lq+d++dvde   +d+l+Crcla+s +yla+GfadG+vrlfdl+trlhv+tf+p+hrdrlG+fsrav
  Cla001399  96 GRSFRLLDTWRDEYVYWHTTARNFRIGRSLHTVLQYDQSDVDE---PDSLMCRCLAISLRYLACGFADGTVRLFDLTTRLHVTTFRPHHRDRLGQFSRAV 192
                ***************************************9998...689*************************************************** PP

        SAP 202 sGiv.isdsrlvfatldGdihvavidgag..aaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGrafhiWdaeteelvfvGGsltdPeavmGWhml 298
                sGiv i+d+rlvfa++dGdih+ +i  +    +++rr++ G+v+ndG+lvdfaG++rWwvGlyaGvpGrafhiWd+++eelvfvGGsltdPe+v+GWhml
  Cla001399 193 SGIViIADARLVFASIDGDIHIGIIAPTPatISPTRRVHEGNVMNDGVLVDFAGCDRWWVGLYAGVPGRAFHIWDGNSEELVFVGGSLTDPESVTGWHML 292
                **972579*****************8643346799***************************************************************** PP

        SAP 299 teltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeerrGlivssldasneayvvvdsrGvatvrrvenleevcrfrvrg.aqrgvlgCvnggy 397
                +elte vGrvrv++re+avaCtsl+l+v+dlrnq+vvl+eee+    iv+s+d++ne+y+vvd +Gva vrrv+++eevc f vrg aqrg +gC+n gy
  Cla001399 293 AELTEPVGRVRVSNRESAVACTSLQLMVLDLRNQEVVLNEEENGVVRIVTSMDVNNETYIVVDGHGVAVVRRVDTMEEVCTFIVRGaAQRGAVGCINMGY 392
                ***************************************99999999***************************************9************* PP

        SAP 398 alvyaggvlrvWeiekkegylyslrervgevnalvaddrhvavsssdgtihlldfga 454
                a++ +gg +rvW+ie+ e  ly +rer+g +na+va+dr+va+s  d t+hl+dfga
  Cla001399 393 AVMSSGGAMRVWDIEHGE-HLYRFRERIGAANAVVANDRYVAASGFDMTLHLWDFGA 448
                ****************77.9***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.1280.502.1E-466130No hitNo description
SuperFamilySSF813832.62E-667114IPR001810F-box domain
Gene3DG3DSA:2.130.10.103.2E-6144214IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509785.49E-18145217IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.4E-10284446IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509785.49E-18284445IPR017986WD40-repeat-containing domain
PROSITE profilePS502949.494396448IPR017986WD40-repeat-containing domain
PROSITE patternPS006780432446IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MSSSAPSSSS FGGGRRRRGG GDFDGPSSSR RRGANEVWPE PFVEALATQV AIDASRSLGR  60
IHAAAALSNV FQVCSTWRAV SRSELLWHRL TTRIWGRSFR LLDTWRDEYV YWHTTARNFR  120
IGRSLHTVLQ YDQSDVDEPD SLMCRCLAIS LRYLACGFAD GTVRLFDLTT RLHVTTFRPH  180
HRDRLGQFSR AVSGIVIIAD ARLVFASIDG DIHIGIIAPT PATISPTRRV HEGNVMNDGV  240
LVDFAGCDRW WVGLYAGVPG RAFHIWDGNS EELVFVGGSL TDPESVTGWH MLAELTEPVG  300
RVRVSNRESA VACTSLQLMV LDLRNQEVVL NEEENGVVRI VTSMDVNNET YIVVDGHGVA  360
VVRRVDTMEE VCTFIVRGAA QRGAVGCINM GYAVMSSGGA MRVWDIEHGE HLYRFRERIG  420
AANAVVANDR YVAASGFDMT LHLWDFGA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11220GGRRRRGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819170.0LN681917.1 Cucumis melo genomic scaffold, anchoredscaffold00085.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008464168.10.0PREDICTED: transcriptional regulator STERILE APETALA isoform X1
SwissprotQ9FKH11e-174SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLA0A221SKY30.0A0A221SKY3_CUCSA; LittleLeaf protein (Fragment)
STRINGXP_008464168.10.0(Cucumis melo)
STRINGXP_004140070.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76873146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.11e-164SAP family protein
Publications ? help Back to Top
  1. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]