PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla001116
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family E2F/DP
Protein Properties Length: 347aa    MW: 38367.8 Da    PI: 5.1656
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla001116genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.31.1e-2793175271
    E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Cla001116  93 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpgnsvaspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 175
                689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.1E-1324347IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.9E-4688181IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.3E-3592175IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.0E-2594175IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.17E-2195176IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144587.55E-43180283IPR014889Transcription factor DP, C-terminal
SMARTSM011383.1E-69182345IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.88E-42182294No hitNo description
PfamPF087815.3E-41183290IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGTRTQQPCR EDDEDDLPSG PGATTISGQS VSMSGSVGSP SSRSEQTMAT PASDNTFLRL  60
NNLDIHGDEA GSQGPTANVK KKRGQRAVGG DKSGRGLRQF SMKVCEKVES KGRTTYNEVA  120
DELVAEFADP GNSVASPDQQ QYDEKNIRRR VYDALNVLMA MDIISKDKKE IQWKGLPRTS  180
VNDIEELKAE RLGLRNRIEK KAAYLQELEE QYVGLQNLIQ RNEQLFSSEN APSGGVSLPF  240
ILVQTRPHAT VEIEISEDMQ LVHFDFNSTP FELHDDNYVL KAMKFCDRPQ CDNTAQNFTP  300
DGGEGSSMSG MYQPPQIPLP TLSNTQVRTP TSPPLPGIIK ARVKHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3686180193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818701e-101LN681870.1 Cucumis melo genomic scaffold, anchoredscaffold00035.
GenBankLN7132611e-101LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455660.10.0PREDICTED: transcription factor-like protein DPB isoform X2
SwissprotQ9FNY21e-162DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A1S3C2420.0A0A1S3C242_CUCME; transcription factor-like protein DPB isoform X2
STRINGXP_004137174.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-152Transcription factor DP