PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla000855
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family RAV
Protein Properties Length: 316aa    MW: 35368 Da    PI: 10.0263
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla000855genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.82.3e-124391155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               s++kGV   + +grW A+I++      ++r++lg+f  + +Aaka++ a+++++g
  Cla000855 43 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEHDAAKAYDIAALRFRG 91
               689***9788.8*********3.....5**********99*************98 PP
2B397.11.1e-30168266194
                EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+ tpsdv+k++rlv+pk++ae++     g +  +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+n L++gD+v F ++   +++l++
  Cla000855 168 FEKTVTPSDVGKLNRLVIPKQHAEKNfpmgeGVVLGKGMLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKDNTLRAGDVVRFLRSTGPDKQLYI 266
                99*************************99986666699*************************************************977556665655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.22E-264398No hitNo description
SuperFamilySSF541712.22E-164399IPR016177DNA-binding domain
PfamPF008475.5E-74391IPR001471AP2/ERF domain
SMARTSM003802.9E-2944105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-204499IPR001471AP2/ERF domain
PROSITE profilePS5103219.9544499IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.106.3E-38163267IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-31166266IPR015300DNA-binding pseudobarrel domain
CDDcd100175.67E-29167267No hitNo description
PfamPF023621.5E-27168267IPR003340B3 DNA binding domain
SMARTSM010192.0E-24168270IPR003340B3 DNA binding domain
PROSITE profilePS5086314.057168272IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDASSIDEST ASDSTSISPV TPLLFHSSPS ATAEAESRKL PSSRFKGVVP QPNGRWGAQI  60
YEKHQRVWLG TFNEEHDAAK AYDIAALRFR GRDAVTNFKP LHHDDHAAVE ADFLNSHSKL  120
EIVDMLRKHT YNDELQQSKR QRGPTTADSA SGTSPNYSGW DSKREVLFEK TVTPSDVGKL  180
NRLVIPKQHA EKNFPMGEGV VLGKGMLLNF EDMGGKVWRF RYSYWNSSQS YVLTKGWSRF  240
VKDNTLRAGD VVRFLRSTGP DKQLYIHANP TPGPAINPVH VVKLFGVNIL QLPVGKTEGV  300
FLELQPTKKQ RIIKPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-5116526611112DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818921e-153LN681892.1 Cucumis melo genomic scaffold, anchoredscaffold01595.
GenBankLN7132631e-153LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004151060.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-123RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A1S3CPL60.0A0A1S3CPL6_CUCME; AP2/ERF and B3 domain-containing transcription factor RAV1-like
STRINGXP_004151060.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-125related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]